PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA037294-PA | ||||||||
Common Name | OsI_38116 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 433aa MW: 46534.4 Da PI: 4.7943 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 65.3 | 1.7e-20 | 9 | 133 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 GfrF+P++ee++++yL + ++g++ + +e i+++d+y + eP+dL k +++ + + +fF+ ++ + + +r++ g+W ++ + BGIOSGA037294-PA 9 KLGFRFNPSQEEVITYYLPRLIAGHPPKDTEGyIHRADVYGAdEPRDLAgKyapVARSPNGDRFFFTGCKRVKG---KFSRSAGGGTWVSQSS 98 67************************6655555*******9869****843443333334478***99998764...7999999*****8866 PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k++++++g ++g k + f + g++tdW+m+ey+l BGIOSGA037294-PA 99 -KDLKNREGIKIGEVKNFRFK----KGGNNTDWLMEEYHL 133 .888888*************8....567789*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.71E-23 | 8 | 152 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 24.62 | 8 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-14 | 11 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MASLDLLLKL GFRFNPSQEE VITYYLPRLI AGHPPKDTEG YIHRADVYGA DEPRDLAGKY 60 APVARSPNGD RFFFTGCKRV KGKFSRSAGG GTWVSQSSKD LKNREGIKIG EVKNFRFKKG 120 GNNTDWLMEE YHLCGKEAGG VVEPVVCRIY VSPRAAPDSV AHQESAALPP PQELVPPPQE 180 LAPPPYPAAQ AAPQAPAPPR QVPVITQQQA PPQKRPAAPV AEPPCATKKM KGAVSAKPMA 240 PQSSVTASAA PPRCAVAPSQ HHPPFQTYPT DPFEPPAPAA SVTQPSVPAT PEQGPAYVPD 300 PADIGMEMDE LMSFLDSTPV DGILPSQLYE YDELAKELED ALQGGGEEDG NDNPPRCATP 360 PPPRPASWPA MAPPPPPHPP ILTFPKDPFE TNEEEDEGED DFASMLRGHV FAPSVVAEEV 420 DVTSSRRGAT VCF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012620 | 0.0 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619212.1 | 0.0 | vegetative cell wall protein gp1 | ||||
TrEMBL | A2ZJW9 | 0.0 | A2ZJW9_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI12G10940.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1832 | 27 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04400.1 | 8e-14 | NAC domain containing protein 77 |