PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA036980-PA
Common NameOsI_37448
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 316aa    MW: 34685.8 Da    PI: 7.1825
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA036980-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.83.3e-30371721128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyat.gkrknra.....tksgyWkat 86 
                       lppG++F Ptdeelv++yL+ k+eg++ +  ++i+e +i++++P++L +k+k+ +e++wyfF+ r+ ++++ ++++nr+     +++g W+at
  BGIOSGA036980-PA  37 LPPGYHFVPTDEELVDFYLRGKIEGRDPPR-RFISEENIMRYDPQKLIEKYKGyGEDRWYFFMVREPSKTKkKDEPNRKvvvdgVEEGSWSAT 128
                       79*************************998.89**************8655553777*****9998776642779999656666679****** PP

               NAM  87 gkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       g+  +++s+    +++ +g k++L++   +a+++e+  W mhey l
  BGIOSGA036980-PA 129 GSVVQIHSTketnRKAIIGSKRVLTYK--SARSAENDMWSMHEYVL 172
                       *******9866655666*********9..5666669********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-3330185IPR003441NAC domain
PROSITE profilePS5100531.60637210IPR003441NAC domain
PfamPF023658.5E-1938172IPR003441NAC domain
Gene3DG3DSA:2.100.10.301.4E-38179315IPR001229Jacalin-like lectin domain
SuperFamilySSF511012.35E-37180315IPR001229Jacalin-like lectin domain
PROSITE profilePS5175230.565181316IPR001229Jacalin-like lectin domain
SMARTSM009153.8E-5192315IPR001229Jacalin-like lectin domain
PfamPF014196.5E-20194315IPR001229Jacalin-like lectin domain
CDDcd096122.14E-39195314IPR033734Jacalin-like lectin domain, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0030246Molecular Functioncarbohydrate binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MNPTIENGGS GGDGSAAAAA AEGSAIWKSE LVPQLQLPPG YHFVPTDEEL VDFYLRGKIE  60
GRDPPRRFIS EENIMRYDPQ KLIEKYKGYG EDRWYFFMVR EPSKTKKKDE PNRKVVVDGV  120
EEGSWSATGS VVQIHSTKET NRKAIIGSKR VLTYKSARSA ENDMWSMHEY VLAGKSQQSH  180
PTKVGPWGGT GGTPHDIPIA PQRLESITIR HGWTIDSMSF SYIDQTGQWR SVGPWGSSSG  240
GDTTTLGLSE YVMEMSGTYG AYNSNVVVMS LRVATNLRAY GPFGRAEGTS FTASGRVVGF  300
FGRSGELLDS IGVYTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xfh_A1e-251823154143Salt stress-induced protein
5xfh_B1e-251823154143Salt stress-induced protein
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977288520.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126201e-156CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA2ZI090.0A2ZI09_ORYSI; Uncharacterized protein
STRINGORUFI11G02830.11e-125(Oryza rufipogon)
STRINGONIVA06G03680.11e-125(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115562137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.14e-20NAC-like, activated by AP3/PI