PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA036588-PA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | TALE | ||||||||
Protein Properties | Length: 256aa MW: 27727.6 Da PI: 9.1903 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.4 | 6.6e-10 | 123 | 160 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + BGIOSGA036588-PA 123 FEHflHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVR 160 664459******************************98 PP | |||||||
2 | BELL | 60.2 | 4.9e-20 | 1 | 43 | 30 | 72 |
BELL 30 lqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +q v+++Fea+ag gsa+ YtslAl++iSr+FrcL+daia q+ BGIOSGA036588-PA 1 MQGVAAAFEAAAGAGSATTYTSLALRTISRQFRCLRDAIAAQV 43 899*************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07526 | 9.6E-15 | 1 | 40 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.904 | 101 | 164 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.23E-11 | 104 | 165 | No hit | No description |
SMART | SM00389 | 7.8E-10 | 104 | 168 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.55E-18 | 105 | 171 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.4E-29 | 107 | 170 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.2E-18 | 121 | 160 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MQGVAAAFEA AAGAGSATTY TSLALRTISR QFRCLRDAIA AQVRAASRGL GEDCGDDEGG 60 GGGGRTTVGS RLRFIDHQLR QQRAMQQLGM VHAAAAGGAA GGGWRPQRGL PERAVSVLRA 120 WLFEHFLHPY PKDSDKVMLA KQTGLTRSQV SNWFINARVR LWKPMVEEMY AEETKAKEEE 180 EEEHDAAAAA AGDRCXXXXX XXXXXXXXXX XXXERGAYTG SAAPMAFQKT AYDHRASSHS 240 RRSASPTAIL LLGNPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5bng_A | 2e-18 | 110 | 168 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 2e-18 | 110 | 168 | 1 | 59 | Homeobox protein Meis2 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.27423 | 0.0 | flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37990436 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK120844 | 0.0 | AK120844.1 Oryza sativa Japonica Group cDNA clone:J023022M14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619926.2 | 1e-133 | LOW QUALITY PROTEIN: BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 4e-74 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | A2ZIB2 | 1e-135 | A2ZIB2_ORYSI; Uncharacterized protein | ||||
STRING | OGLUM12G04370.1 | 1e-134 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4816 | 37 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 6e-63 | BEL1-like homeodomain 1 |
Publications ? help Back to Top | |||
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