PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA036575-PA
Common NameOsI_37579
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 432aa    MW: 48829.1 Da    PI: 6.551
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA036575-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.98.7e-26108203185
          trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyf 82 
                       +Wt+++v++Li+a+++++e+ ++++          +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++t ++ +++++++
  BGIOSGA036575-PA 108 KWTDSMVKLLITAVSYTGEDPGADSgagkrnsaimQKKGKWKAISKVMGERGCSVSPQQCEDKFNDLNKRYKRLTDILGRGTaCKIVENHALL 200
                       7*********************9877778889999**********************************************549999999998 PP

          trihelix  83 dql 85 
                       d +
  BGIOSGA036575-PA 201 DCM 203
                       877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.8E-20106230No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MEGNNLPSGS LMRSNSGQMH APNPGKQGFD HTQMPGNLSM YVNQSTDSDH LSEFQFGELG  60
KVDHHHHHHH RQHAKNSMSD DEEHGVNEDA TDSQSGKGKK GAAWQRMKWT DSMVKLLITA  120
VSYTGEDPGA DSGAGKRNSA IMQKKGKWKA ISKVMGERGC SVSPQQCEDK FNDLNKRYKR  180
LTDILGRGTA CKIVENHALL DCMSNLSDKM KDDARKILSS KHLFYEEMCS YHNNNRVSLP  240
EDPALQRSLQ LALRCKDEHD LRRGTSGDAD EDDQSVDSDS EEENDEENYT LQGDKSALPM  300
HKRLRLMTDQ EDVGFGNSSS SHGCSRRSDS HGISLDINKA FPDGTNLALA QKDLATQSAD  360
LEEQRLQIEV QAVYLAKQRL KWERFSKNKD RELEQMRLEN EKMRLENKRL ELEVRHKELE  420
LELKQKGSGN HA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.103610.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329883310.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619923.10.0trihelix transcription factor GT-3a
TrEMBLA2ZID30.0A2ZID3_ORYSI; Uncharacterized protein
STRINGONIVA12G03540.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-102sequence-specific DNA binding transcription factors