PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA036374-PA
Common NameOsI_37984
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 1351aa    MW: 150223 Da    PI: 7.8229
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA036374-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.0003512321255122
                        EEET..TTTEEESSHHHHHHHHHH CS
           zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt 22  
                        ++C    C++sFs++ +L  H r 
  BGIOSGA036374-PA 1232 FPCDieGCDMSFSTQQDLLLHKRD 1255
                        789999***************985 PP
2zf-C2H211.90.000713151341123
                        EEET..TTTEEESSHHHHHHHHHH..T CS
           zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                        y+C+   Cg++F+  s++ rH r+  H
  BGIOSGA036374-PA 1315 YECQepGCGQTFRFVSDFSRHKRKtgH 1341
                        899999****************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.9E-161960IPR003349JmjN domain
PROSITE profilePS5118314.2012061IPR003349JmjN domain
PfamPF023753.4E-142154IPR003349JmjN domain
PROSITE profilePS5118432.998186355IPR003347JmjC domain
SMARTSM005585.2E-43186355IPR003347JmjC domain
SuperFamilySSF511979.61E-23203352No hitNo description
PfamPF023731.6E-34219338IPR003347JmjC domain
SMARTSM003559.712321254IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.90712551284IPR007087Zinc finger, C2H2
SMARTSM003551512551279IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012571279IPR007087Zinc finger, C2H2
SuperFamilySSF576672.74E-1412661321No hitNo description
Gene3DG3DSA:3.30.160.605.2E-1112821309IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.65512851314IPR007087Zinc finger, C2H2
SMARTSM003558.6E-412851309IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012871309IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.1E-1013101338IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.1813151341IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.92613151346IPR007087Zinc finger, C2H2
PROSITE patternPS00028013171341IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1351 aa     Download sequence    Send to blast
MSLQPPAVEP PEWLRTLPVA PEYHPTLAEF ADPIAYILRI EPEASRYGIC KIVPPLPRPP  60
EDDTFRRLQD AFAAAASSNG AGGDPSPTFP TRLQQVGLSA RNRRAASRRV WESGERYTLE  120
AFRAKAAEFE PPRHAAPPRN PTHLQLEALF WAACASRPFS VEYGNDMPGS AFASPDELPD  180
AANATDVGET EWNMRVAPRA RGSLLRAMAR DVAGVTTPML YVAMLYSWFA WHVEDHELHS  240
LNFLHFGKAK TWYGVPRDAM LAFEETVRVH GYADDLNAIM AFQTLNEKTT VLSPEVLLSA  300
GVPCCRLVQK AGEFVITFPG AYHSGFSHGF NCGEASNIAT PHWLQVAKEA AIRRASTNCG  360
PMVSHYQLLY ELALSLRPRE PKNFYSVPRS SRLRDKNKNE GDIMVKENFV GSVTENNNLL  420
SVLLDKNYCI IVPNTDFFVP SFPVALESEA TVKQRFTAGP CSISQQGAEN MAVDHVAVDK  480
VTDIQDMSGS LYPCETSLVG CSNRKLYETK YGQRDAAALC LSTSEIQSRG IDKARSHPAG  540
GILDQGRLPC VQCGILSFAC VAIIQPREAA VQFIMSKECI SSSAKQGGIG ASDDTSNWID  600
QSHEISPPPG PASGTDDNVK HAVSLAHVSD RCRELYASNT DGCTSALGLL ASAYDSSDSD  660
DETTEDVSKH SKKNDSVNQS TDPQILEISA SCSSTVQCQK TNSHLHEEEC EARATSLMKP  720
VSHNSRPISQ SNRDTDIDHF IELGKSGTQC SGYLDLVDDL TTSVLKSSSD TCVSAAKASM  780
DPDVLTMLRE KKTCVYNYMS NYTKGINCKY PRAESAAKVI AEELGIKHDW KDITFKEATE  840
EDVKKIRLAL QDEDAEPTGS DWAVKMGINI YYSAKQSKSP LYSKQIPYNS IIYKAFGQEN  900
PDSLTDYGCQ KSGSTKKKVA GWWCGKVWMS NQVHPLLARE REEQNSSVVY GKAMFTTISH  960
GKVQDEASTR CNTSNRTPSK RTSRRKKGVS AEKSKPKNKR STASDEASMH CSGLGMNSGV  1020
IHDQTENSDD YDKHGNGDEI EEGTNPQKYQ QRKLQNVTRK SSSKKRKDEK RTDSFHELYD  1080
EDNGVDYWLN MGSGHDATLG NSQQQSPDPV KVKSGGKLQG KRKSSKYKSN DDLLNEENKL  1140
QKMNKKSSSK KQKNDKINRQ LQEDQTEDDH MDHLVDVAVA DEVTLDNEDK ITEDKIDDVK  1200
VKSRGKSQNG KRKGSKHQAT DGLRAGNKVA KFPCDIEGCD MSFSTQQDLL LHKRDICPVK  1260
GCKKKFFCHK YLLQHRKVHI DERPLKCTWK GCKKAFKWPW ARTEHMRVHT GVRPYECQEP  1320
GCGQTFRFVS DFSRHKRKTG HSSDKRRKNS T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A9e-70123767353Transcription factor jumonji (Jmj) family protein
6ip4_A9e-70123767353Arabidopsis JMJ13
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.487060.0panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154881690.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0652510.0AK065251.1 Oryza sativa Japonica Group cDNA clone:J013002J08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620626.10.0lysine-specific demethylase REF6
TrEMBLB8BP430.0B8BP43_ORYSI; Uncharacterized protein
STRINGORGLA12G0080500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67183035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-159relative of early flowering 6