PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA035973-PA | ||||||||
Common Name | OsI_38817 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 222aa MW: 25194.9 Da PI: 10.4231 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.8 | 1.6e-15 | 10 | 58 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 +rW +eEd +l+ +v+q+G++ W++++++m+ ++R +k+c +rw +yl BGIOSGA035973-PA 10 QRWRPEEDAILLAYVRQYGPREWSLVSQRMNrpLHRDAKSCLERWKNYL 58 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 35 | 3.3e-11 | 64 | 108 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T +E+ l +++ +++G++ Wk+Ia++++ gRt+k + +w + BGIOSGA035973-PA 64 KGSLTDDEQRLVIRLQAKHGNK-WKKIAAEVP-GRTAKRLGKWWEVF 108 57789*****************.*********.*****999999766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.429 | 1 | 58 | IPR017930 | Myb domain |
SMART | SM00717 | 6.1E-13 | 8 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.05E-21 | 10 | 103 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-20 | 11 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.26E-8 | 11 | 58 | No hit | No description |
Pfam | PF13921 | 4.0E-14 | 12 | 72 | No hit | No description |
PROSITE profile | PS51294 | 22.391 | 59 | 113 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-9 | 63 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-15 | 66 | 107 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.33E-6 | 68 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MQPPPMRESQ RWRPEEDAIL LAYVRQYGPR EWSLVSQRMN RPLHRDAKSC LERWKNYLRP 60 GIKKGSLTDD EQRLVIRLQA KHGNKWKKIA AEVPGRTAKR LGKWWEVFKE KQQRELRDRD 120 RRRLPPPLDG DERGGAGGRY DWLLEDFADK LVNDHHRRMM AAPILPPWMS SSPSSSSSPS 180 VTLSLASAAV APAPAAPPPT WGGGGGEVVV AELMECCSAW AK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-16 | 12 | 105 | 7 | 97 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 3e-16 | 12 | 105 | 7 | 97 | C-Myb DNA-Binding Domain |
1msf_C | 3e-16 | 12 | 105 | 7 | 97 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for normal cell differentiation. May interact with other proteins to repress the knox homeobox genes (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT828749 | 0.0 | CT828749.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA053P05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620377.1 | 1e-116 | protein rough sheath 2 homolog | ||||
Swissprot | Q94IB1 | 1e-117 | RS2_ORYSJ; Protein rough sheath 2 homolog | ||||
TrEMBL | B8BML7 | 1e-159 | B8BML7_ORYSI; Uncharacterized protein | ||||
STRING | OBART12G16450.1 | 1e-142 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5190 | 36 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37630.1 | 2e-65 | MYB family protein |