PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA035942-PA
Common NameOsI_38877
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 275aa    MW: 30476.8 Da    PI: 5.928
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA035942-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.7e-05187209123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ CgksF +   L  H+r+H
  BGIOSGA035942-PA 187 HRCNTCGKSFGSGQALGGHMRRH 209
                       79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.17E-6184213No hitNo description
SMARTSM003550.0079187209IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.5E-4187209IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.907187214IPR007087Zinc finger, C2H2
PfamPF139122.3E-11187210IPR007087Zinc finger, C2H2
PROSITE patternPS000280189209IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MMMHRGEKVV VKAEEEAAGL IEALGIGESM QDVMAFSSVK RKRSFRSKRQ TPALSLEEIE  60
AADALLLLSG CFDKTSAYED CYLGDIEESS LGSIALTEVN MNALDRCLIR SVDSKKPIND  120
NNSGYKDCYG QSDKENCLTV PKEEMDLNDF DHELVRDAAL RKPRTDNLDE EMKFGDLPAA  180
AMKDNSHRCN TCGKSFGSGQ ALGGHMRRHY VRKCNHHRGV ADRAGSVLMK VQKLKLRLDP  240
ILFDVTLPAL TDGDCCISVG VKPEPQLWCV TSNLQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.329960.0callus| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329873500.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619009.10.0uncharacterized protein LOC4352630 isoform X2
TrEMBLA2ZM170.0A2ZM17_ORYSI; Uncharacterized protein
STRINGOMERI01G15150.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91122229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.18e-08C2H2 family protein