PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA035875-PA
Common NameOsI_39028
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family CPP
Protein Properties Length: 780aa    MW: 84262.4 Da    PI: 6.8846
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA035875-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.58.2e-16475514241
               TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                       ++k+C+CkkskClk+YCeCf+ag++Cse C+C++C N  +
  BGIOSGA035875-PA 475 SCKRCSCKKSKCLKLYCECFHAGVFCSEPCSCQGCLNMPS 514
                       689**********************************865 PP
2TCR50.73.5e-16559597139
               TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                       ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  BGIOSGA035875-PA 559 RHKRGCNCKKSSCLKKYCECYQGGVGCSVSCRCEGCKNA 597
                       589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011146.5E-16474515IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.454475599IPR005172CRC domain
PfamPF036384.5E-12477512IPR005172CRC domain
SMARTSM011144.5E-17559600IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-11561597IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 780 aa     Download sequence    Send to blast
MDTPDRPPRA AATAAVEMLR PFAAPDWGLI VLEVSIQDSP VFNFINSLSP IPPPKPSDSA  60
HNVQLFKSSD LAPVSSIFAS PHVNPAKESK LPIREDSVQL SRESHSPNSV RTRTGATSSI  120
IRMIRCKNIV SENCSITCYL NDSTSSKASQ PIQLCGGSAE SDTNQNTDGK KDPTTEQDRT  180
DIEFVLLDQC GPEKMDSSQS GNNACENQLS EQHKDELGSF DGGYMFAHQP HSDMLRLAPP  240
FESETQLVNE TLQTDNVYCE TLLTDGPSGS YTQNSAPDPH LYWAGAVEGC ATDYTPQMLP  300
GACQSQLVPN DQINNKLNEP SDYMPMDHNV SSQNLRGMRR RCLFNEKSGA ANEGAKNSSA  360
RHSTNSTTPR RKISSSDNNL KTLRTPPCAL PGIGLHLNAL ATVPKDKMVP HNDIQSSLNQ  420
ASNVPSAVGS SPPTDDPHTI NDDSSQTAVV AYVGESSQGS PKKKRHKFDN GDGTSCKRCS  480
CKKSKCLKLY CECFHAGVFC SEPCSCQGCL NMPSNMETVL STREQIESRN PLAFAPKVIR  540
TEPGQELADD SNKTPASSRH KRGCNCKKSS CLKKYCECYQ GGVGCSVSCR CEGCKNAFGR  600
REGVALLGIE EAKRGCEEKD GGVKEETTDN DKQLVIYQDS INLTPAESVL ATPSVVDYRP  660
LVALPPLSSK KPRSSTKLGG YSSRLEGHLK SDILLSPFES YAEMMLGDGT SNVLKGESSP  720
QTSVKVVSPN KKRVSPPRIG TGLSPICKSG RKLILKSIPS FPSLGVDITN EDPNTSSLAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-1747959614120Protein lin-54 homolog
5fd3_B7e-1747959614120Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.185790.0callus| flower| leaf| panicle| root| seed| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329839650.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0739420.0AK073942.1 Oryza sativa Japonica Group cDNA clone:J033075J10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620275.10.0protein tesmin/TSO1-like CXC 2
TrEMBLB8BMW20.0B8BMW2_ORYSI; Uncharacterized protein
STRINGOS12T0605500-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127462630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.18e-74Tesmin/TSO1-like CXC domain-containing protein