PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA034861-PA
Common NameOsI_35222
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 435aa    MW: 49562.4 Da    PI: 6.4457
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA034861-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.85.1e-27114210186
          trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 
                       +Wt+++v++Li+a+++++e+ +++           +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ +++++++++++
  BGIOSGA034861-PA 114 KWTDSMVKLLITAVSYTGEDPGADLgggrrnysmmQKKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGtACNVVENHSLL 206
                       7*********************8744455667777**********************************************55********** PP

          trihelix  83 dqle 86 
                       d+++
  BGIOSGA034861-PA 207 DHMD 210
                       **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.1E-20112235No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MEGSNPPGNM TQGPSYGSLD LHGISKQMHP PNSGNQGFNQ PQIPGNFTIP MDRVTEPDNI  60
SDGVQLGQHG KIAHHHHHHR HHSKNHGSDE EEHDMNEDAA DGKDKKGSPW HRMKWTDSMV  120
KLLITAVSYT GEDPGADLGG GRRNYSMMQK KGKWKAISKV MGERGCHVSP QQCEDKFNDL  180
NKRYKRLTDI LGRGTACNVV ENHSLLDHMD ISEKMKEDAR KILNSKHLFY EEMCSYHNNN  240
RISLPEDPAL QQSLQLALRC KEDNDFMRHA SGDAELDDDQ SEDSDYEGNE EEHRAVDTNI  300
RGPSMHKRMW HVVDYGDVGF VTSCSNDGSG RSDPYDVLDI NKPFPDGCDL ALVQKDLALK  360
AAEIQKHRLQ IETKAVQLAK QRLKWEMFRK NKDLELEKLA LENEQMMLQN KRFELDLRHK  420
ELELEIKIKG NANHP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.877680.0callus| flower| leaf| panicle| seed| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329863630.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615140.10.0uncharacterized protein LOC4349866 isoform X1
RefseqXP_015615141.10.0uncharacterized protein LOC4349866 isoform X1
RefseqXP_015615142.10.0uncharacterized protein LOC4349866 isoform X2
TrEMBLA2ZBS20.0A2ZBS2_ORYSI; Uncharacterized protein
STRINGOS11T0163500-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-94sequence-specific DNA binding transcription factors