PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA034853-PA
Common NameOsI_35210
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 366aa    MW: 39754.4 Da    PI: 6.7462
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA034853-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.44.9e-11162210553
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 
                       kr++r   NR +A rs +RK +++ eLe+kv++L++e ++L  +l  l+
  BGIOSGA034853-PA 162 KRAKRILANRQSAARSKERKIKYTGELERKVQTLQTEATTLSTQLTLLQ 210
                       9****************************************99988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.3E-11158222IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.783160210IPR004827Basic-leucine zipper domain
PfamPF001705.0E-10162210IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.4E-11162211No hitNo description
SuperFamilySSF579597.5E-11162214No hitNo description
CDDcd147035.57E-17163199No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDPRFPPPAP SGGAPPRGHH RRAHSETFIR LPDADLLLDP DGEFGFSDLD FPSLSDDSPA  60
ASDPTPPPPP PALPQAAPRP PGGAHLRSLS LDAAFFDGLA FQGGGGGGGA GSGSSGGGAG  120
HKRSGSMDGE SSLFEGESAP PDYAKKAMPA DRLAELALLD PKRAKRILAN RQSAARSKER  180
KIKYTGELER KVQTLQTEAT TLSTQLTLLQ AYWDAMIIKS VSLFLVVFIL NCEYRYSSVL  240
ANCTFQDKQR DTSGLTAENR ELKLRLQSME EQLQLRDALN DALREEVQRL KIAAGQVPNM  300
NGNSFNGGLQ QQQQQQQMPT YFSQQQQMHY LSGHQGRHHH PNNPHNSLNG GQSMSGQTLN  360
DSMDFM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.537320.0callus| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329848090.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0996000.0AK099600.1 Oryza sativa Japonica Group cDNA clone:J013047E21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617778.11e-164transcription factor VIP1
TrEMBLB8BJ900.0B8BJ90_ORYSI; Uncharacterized protein
STRINGOPUNC11G03640.11e-179(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19253892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43700.11e-48VIRE2-interacting protein 1