PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA034714-PA
Common NameOsI_34935
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 351aa    MW: 39410 Da    PI: 7.1578
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA034714-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM152.71.7e-47141461127
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtd e++ +yL +k  + +++    i+evd++k+ePwdLp +++ +++ewy Fs++d ky+tg r+nratk+gyWkatgkd+e++
  BGIOSGA034714-PA  14 LPPGFRFHPTDAEVILNYLLEKFINPSFTS-LPIHEVDLNKCEPWDLP-TARMGNNEWY-FSRKDMKYPTGMRTNRATKEGYWKATGKDREIF 103
                       79**********************999888.56***************.4455777885.7999***************************** PP

               NAM  94 sk.........kgelvglkktLvfykgrapkgektdWvmheyr 127
                       +          +++lvg+kktLvfy grapkg++t+Wvmhe+r
  BGIOSGA034714-PA 104 KPaiyegssknNKQLVGMKKTLVFYMGRAPKGTRTNWVMHEFR 146
                       *99999999887888***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-5310173IPR003441NAC domain
PROSITE profilePS5100549.1614173IPR003441NAC domain
PfamPF023651.5E-2215146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MVEPVKSELG SLFLPPGFRF HPTDAEVILN YLLEKFINPS FTSLPIHEVD LNKCEPWDLP  60
TARMGNNEWY FSRKDMKYPT GMRTNRATKE GYWKATGKDR EIFKPAIYEG SSKNNKQLVG  120
MKKTLVFYMG RAPKGTRTNW VMHEFRPHAN LHNHYPNLRF NPNEWVVCKV FHKKQGDEAI  180
KNQQQQPAVD QADDDDIFQL DDIFADPSIY DFSNSSANIL SAPPNNNAVH SSVSAGTTMT  240
STTTASSFQH QPNCYSAPLQ QHVSSWNNTP GAGGAHGIGS SYYNLQQQQQ QAAMVKDLED  300
IIAVPDYGTL LPSSNKGSSI RSATAGVSQQ NPLGVPQYKI ENYGDHYISR E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-42917412166NO APICAL MERISTEM PROTEIN
1ut4_B9e-42917412166NO APICAL MERISTEM PROTEIN
1ut7_A9e-42917412166NO APICAL MERISTEM PROTEIN
1ut7_B9e-42917412166NO APICAL MERISTEM PROTEIN
3swm_A1e-41917415169NAC domain-containing protein 19
3swm_B1e-41917415169NAC domain-containing protein 19
3swm_C1e-41917415169NAC domain-containing protein 19
3swm_D1e-41917415169NAC domain-containing protein 19
3swp_A1e-41917415169NAC domain-containing protein 19
3swp_B1e-41917415169NAC domain-containing protein 19
3swp_C1e-41917415169NAC domain-containing protein 19
3swp_D1e-41917415169NAC domain-containing protein 19
4dul_A9e-42917412166NAC domain-containing protein 19
4dul_B9e-42917412166NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1567648860.0
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Predominantly expressed in developing vascular tissue of the leaves and roots, and in developing flowers. {ECO:0000269|PubMed:15654622}.
UniprotTISSUE SPECIFICITY: Expressed in phloem. {ECO:0000269|PubMed:15654622}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616089.10.0NAC domain-containing protein 77-like
SwissprotQ5CD171e-179NAC77_ORYSJ; NAC domain-containing protein 77
TrEMBLA2ZAZ50.0A2ZAZ5_ORYSI; Uncharacterized protein
STRINGONIVA11G01640.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51203063
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.23e-63Arabidopsis NAC domain containing protein 87