PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA034369-PA
Common NameOsI_35402
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GATA
Protein Properties Length: 262aa    MW: 27850 Da    PI: 10.647
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA034369-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.15.6e-19194227134
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                       Cs+Cgt++Tp+WR gpdg+ tLCnaCG++ +  +
  BGIOSGA034369-PA 194 CSHCGTSETPQWRMGPDGPGTLCNACGIRSKMDR 227
                       *****************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.7E-17188238IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.231188226IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.85E-14190251No hitNo description
Gene3DG3DSA:3.30.50.109.9E-16192227IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.10E-16193249No hitNo description
PROSITE patternPS003440194219IPR000679Zinc finger, GATA-type
PfamPF003208.8E-17194228IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MAKGQPTVPV TPAKSGGASN GSSRPAARVA AATELSVSFD DEAGIGPDVH DYEDYEDKTP  60
APEPGAATPE TATLSSGLSG ATSATTTPSD SSLSSPPSLS SVFPRIARVF PSRTKPRRRR  120
TLRRQHWSLI CPLHLVPVAA AARGKSISEL NASASASAGT DAGTPSINDG GGGSYHRRVV  180
GRQRNRQVRK DRRCSHCGTS ETPQWRMGPD GPGTLCNACG IRSKMDRLLP EYRPSTSPSF  240
NGDEHSNRHR KVLKLREKKG RD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8BJI60.0B8BJI6_ORYSI; Uncharacterized protein
STRINGONIVA11G05790.11e-102(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127772434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.19e-28GATA transcription factor 7