PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA032907-PA
Common NameOsI_33558
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 543aa    MW: 56431.8 Da    PI: 7.7747
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA032907-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.31e-25191541127
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                       lp Gf F Ptd+el+   L++k  g++  +++++ +++++i++++P +L  k +k eek  +yfFskr+  ++++kr+ r+++ g W+++g  
  BGIOSGA032907-PA  19 LPIGFYFAPTDQELL-AILEAKRLGRPlSRAHDAfFHDIRILDFHPAELYeKYAKDEEKgYIYFFSKREFPTSSKKRPLRVAEGGAWNSSGAV 110
                       699************.7799999999954445556**************8345555555455******************************9 PP

               NAM  90 kevlsk....kgelvglkktLvfykg..rapkgektdWvmheyr 127
                        +v+++    +g +vg kktLvf++    +++++kt+W ++e++
  BGIOSGA032907-PA 111 YKVVKSsksgGGYDVGHKKTLVFHQRfpGDKEAVKTNWAIQEFT 154
                       99999766666666**********7544667789********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-3212173IPR003441NAC domain
PROSITE profilePS5100531.15519174IPR003441NAC domain
PfamPF023656.9E-1320154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MAAPEDGEDK NFGKNKHGLP IGFYFAPTDQ ELLAILEAKR LGRPLSRAHD AFFHDIRILD  60
FHPAELYEKY AKDEEKGYIY FFSKREFPTS SKKRPLRVAE GGAWNSSGAV YKVVKSSKSG  120
GGYDVGHKKT LVFHQRFPGD KEAVKTNWAI QEFTRIIGPQ NEVPDLAVYR LYKMRKEGRE  180
TPADLAADEA AAAAAMNNRG QQASAAAMAL PPPATGLPGG RMMSMADKAN MASTSKAYGP  240
SKSSSSQLQQ DAAAAAAPPN AAGASNWAPR PCNCRECAPA AGHYGYFAAA AAMNNRGGQA  300
SAAAKALPLP APGLPGVRRM SMADKANMAS TSKAYATSQS SSSQLQQGAA AVAAPPNAAG  360
PSNWAPRPCN CRECAPAAGQ YGYFASMVPR PSLDRKGKGK APMDCAEQAA GGGGCHAESK  420
STPAPPKGAE YYGCSVAVED DDEELLKFLQ AMVRGEEVEG DGDHAMADER GPQQGSSPVA  480
AAAASGSAPA GHDGRRGSLQ GGHHGSSSPT SLAAAAATGD DVTAAASAGD DVSGSQQEDH  540
PAR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.633080.0panicle
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2421580.0AK242158.1 Oryza sativa Japonica Group cDNA, clone: J075155G16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614025.10.0spidroin-2
TrEMBLA2Z7870.0A2Z787_ORYSI; Uncharacterized protein
STRINGOS10T0414000-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2202166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.13e-12NAC family protein