PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA032875-PA
Common NameOsI_33490
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 410aa    MW: 43186.7 Da    PI: 4.3976
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA032875-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM52.41.7e-16129254127
               NAM  54 eekewyfFskr..dkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfy...kgrapkgektdWvmheyr 127
                       e++ +yfFs+r  + k+++++++ r++++g+Wka+g +k+v sk  +g +vg k t+vfy    + +++++kt+W mhey+
  BGIOSGA032875-PA  12 EDRCIYFFSRRlfAAKARNKRQPMRVANDGTWKASGGSKTVRSKkvGGIDVGQKLTMVFYerwFEGDQNPVKTNWAMHEYT 92 
                       45567***99844456668889999*****************99888899**********55524566779*********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.6861117IPR003441NAC domain
SuperFamilySSF1019412.88E-1811100IPR003441NAC domain
PfamPF023653.3E-91692IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MACAETYIEN MEDRCIYFFS RRLFAAKARN KRQPMRVAND GTWKASGGSK TVRSKKVGGI  60
DVGQKLTMVF YERWFEGDQN PVKTNWAMHE YTKIIPSSKN QKEGGHRAGE RCRRGVEHGQ  120
ALHAGGTATA YATATAIAEH GRIIVGNVAT ATAIARPGWV VVDDAAGTAT AAAWPARVVG  180
GDVALPGLAG EMTSMADQVN MASTSQASAP SSELPQDWYD EYEVAYGAAA PPSPSTISCA  240
ALPSSPTAWW PSSIGGPVQH DGYLGMADSA SCNTLEHLLP SAAIPPEPMA PPKNSPAAPP  300
PADAGGNYDH PELADYGGGV QAQHEHHQPQ ELTDGADGDA QLELGAAEFD SERVAEMISQ  360
IMDGEFVFKF EDDTIFSFNE VAAAPMLIDG GGDGDGDGAD GGVGDDPFDN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.984200.0flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876487.11e-159LOW QUALITY PROTEIN: proline-rich protein 36, partial
TrEMBLB8BGQ10.0B8BGQ1_ORYSI; Uncharacterized protein
STRINGOGLUM10G09030.11e-175(Oryza glumipatula)
STRINGOMERI10G06210.11e-172(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.12e-09NAC domain containing protein 3