PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA032849-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 297aa    MW: 31487.3 Da    PI: 4.891
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA032849-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-1993143256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                       +++GVr ++ +g+W+AeIrdp+    r  r++lg+f tae Aa+a++aa+++l+g+
  BGIOSGA032849-PA  93 RFRGVRKRP-WGKWAAEIRDPV----RgVRVWLGTFPTAESAARAYDAAARRLRGA 143
                       69*******.**********63....56**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.64E-2193150IPR016177DNA-binding domain
SMARTSM003804.4E-3593156IPR001471AP2/ERF domain
CDDcd000182.11E-1593127No hitNo description
Gene3DG3DSA:3.30.730.108.6E-3193151IPR001471AP2/ERF domain
PfamPF008474.2E-1393142IPR001471AP2/ERF domain
PROSITE profilePS5103224.39593150IPR001471AP2/ERF domain
PRINTSPR003678.3E-1194105IPR001471AP2/ERF domain
PRINTSPR003678.3E-11116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MCGGAILADL IPSPRSGGHT KKNKRRRISD DEDFEAAFEE FDAGDDDSDS DSESEEVDEY  60
DVVVDDDDSE DGVVVLPPPP PPVIPHERHG ARRFRGVRKR PWGKWAAEIR DPVRGVRVWL  120
GTFPTAESAA RAYDAAARRL RGAKAKPNFP SAPPPSAAAH RRKKRRAHAA TRSPSSPPAT  180
SEVTAASASA SSDVPAPAFA SFVGEPGHGG AKSMPTTSHT SQPAPPATVA SENVDDPEVF  240
DPYDVHGGLA SYFAGGAYES LESLFAHGGD SAAVDQAASD HWPAALWSFA DDGSFCF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1994150663ATERF1
3gcc_A4e-1994150663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12327KRRRI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.566650.0leaf| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166334570.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1102690.0AK110269.1 Oryza sativa Japonica Group cDNA clone:002-163-C07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613362.21e-150ethylene-responsive transcription factor 1-like
TrEMBLA0A0E0IRN60.0A0A0E0IRN6_ORYNI; Uncharacterized protein
STRINGONIVA10G08250.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151951415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.17e-15ERF family protein