PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA032091-PA | ||||||||
Common Name | OsI_33180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 177aa MW: 19550.1 Da PI: 7.0456 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.7 | 5.5e-08 | 53 | 96 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++T+ +d+ l++++ +lG + Wk I r + gRt k+rw+ ++ BGIOSGA032091-PA 53 PFTARDDDELLRLHYRLGDR-WKEIGRAVY-GRTSRVMKHRWRELR 96 79****************99.********9.***********9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.71E-9 | 47 | 98 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-8 | 48 | 95 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-4 | 50 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-6 | 53 | 95 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.52E-5 | 53 | 95 | No hit | No description |
PROSITE profile | PS50090 | 7.306 | 53 | 96 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MDAGGGRAAA APRQGERLPP LEPGRQEHAT PLREVVPRQV APPPRPRDVY HRPFTARDDD 60 ELLRLHYRLG DRWKEIGRAV YGRTSRVMKH RWRELRRCGF LAAAARKEQA ALDMADDTVE 120 TSEVEEPADQ SLPSLELQRS TLADTLASSF GSCSLATDHV MDPLAGSLAL GFACLAV |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297610325 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012618 | 0.0 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645964.1 | 5e-62 | transcription factor MYB73 | ||||
TrEMBL | B8BGD4 | 1e-124 | B8BGD4_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI10G07430.1 | 1e-102 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12569 | 20 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 2e-09 | myb domain protein r1 |