PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA031988-PA | ||||||||
Common Name | OsI_33451 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 175aa MW: 19966.9 Da PI: 10.4938 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 85.6 | 9.3e-27 | 36 | 172 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkya..tgkrknratksgyWkatgk 88 +p+G F P+d el +k v+g+ l++v+++++i++++P L+ + + +ee+ +yfFskr+ +++ +++r+ r+tk g+Wka+g BGIOSGA031988-PA 36 MPVGWYFVPKDLELFAILRCKLVRGQLpGALNNVFEHIRILEIHPALLHeTYIGNEEDgYIYFFSKRQFTTKagNKRRPMRVTKGGTWKASGG 128 699************7766666666653334566999***********8445555555356****998655533788999************* PP NAM 89 dkevlsk..kgelvglkktLvfy...kgrapkgektdWvmheyr 127 +k+v sk +g +vg k t+vfy + ++++ kt+W mhe++ BGIOSGA031988-PA 129 SKTVRSKkvGGIDVGQKLTMVFYerrFEGDRNPIKTNWGMHEFT 172 *****99888899**********43312456678********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-32 | 29 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.309 | 36 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-14 | 37 | 172 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MAEQPPEGRG GGGNNNGKWK GKEKMVPEYG KNRHGMPVGW YFVPKDLELF AILRCKLVRG 60 QLPGALNNVF EHIRILEIHP ALLHETYIGN EEDGYIYFFS KRQFTTKAGN KRRPMRVTKG 120 GTWKASGGSK TVRSKKVGGI DVGQKLTMVF YERRFEGDRN PIKTNWGMHE FTNDH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012618 | 1e-152 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613639.1 | 1e-103 | NAC transcription factor NAM-B2 | ||||
TrEMBL | A2Z6Y1 | 1e-126 | A2Z6Y1_ORYSI; Uncharacterized protein | ||||
STRING | OGLUM10G08700.1 | 1e-109 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3563 | 23 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08790.1 | 3e-12 | NAC family protein |