PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA031626-PA

Common Name

OsI_34167

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Dof

Protein Properties

Length: 247aa MW: 24685.6 Da PI: 9.4789

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA031626-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	104.4	6.4e-33	77	133	5	61
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++cprC s+ntkfCyynnys +qPry+CkaCrr+Wt+GG+lr+vPvGggr+++k++ BGIOSGA031626-PA 77 PRQCPRCGSANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPVGGGRKNSKRA 133 679***********************************************9998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	26.468	78	132	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-30	78	132	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	80	116	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-16	85	123	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MSSPFLGSSS SSASSPLSYL TPPRPPPPPP PLLMGQGYAA AANGGIGGGG VEAVNAAAAP 60 RQGGRHAGHP PLPRPPPRQC PRCGSANTKF CYYNNYSRTQ PRYLCKACRR HWTEGGTLRD 120 VPVGGGRKNS KRAAGGGKAG ATASTAASAH VVAPAAAPPT SSSFPDLLRQ MLMAPATAGG 180 GGGYSIDLTT WQQMAAFAAP PQAATGDVGG AVGAASTAAP DANCGGGGVQ YWNGWLQDDM 240 PGLDGSC

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.55986	0.0	root

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	116633934	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109091	0.0	AK109091.1 Oryza sativa Japonica Group cDNA clone:002-155-A04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015614315.1	1e-174	dof zinc finger protein 1-like
TrEMBL	B8BHN5	1e-174	B8BHN5_ORYSI; Uncharacterized protein
STRING	OS10T0496000-02	1e-174	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.3	1e-17	Dof family protein