PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA031580-PA | ||||||||
Common Name | OsI_34264 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | YABBY | ||||||||
Protein Properties | Length: 103aa MW: 11282.8 Da PI: 10.7304 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 76 | 1.2e-23 | 22 | 57 | 135 | 170 |
YABBY 135 eeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +eiqrika+nPdishreafsaaaknWahfP+ihfgl BGIOSGA031580-PA 22 DEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 57 69********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.2E-21 | 22 | 57 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
MRRRRGGSTT ARAKRLEEND GDEIQRIKAG NPDISHREAF SAAAKNWAHF PHIHFGLMPD 60 HRGLKKTSLL PQDHQRKDGL LKEGLYAAAA AAAAAANMGV APY |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.58966 | 1e-135 | flower| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 124271031 | 1e-135 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot apex and young inflorescences. {ECO:0000269|PubMed:17216490}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB274015 | 1e-132 | AB274015.1 Oryza sativa Japonica Group OsYABBY3 mRNA for OsYABBY3 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613818.1 | 3e-53 | protein YABBY 3 isoform X1 | ||||
Refseq | XP_025876472.1 | 1e-53 | protein YABBY 3 isoform X2 | ||||
Swissprot | Q8L556 | 2e-54 | YAB3_ORYSJ; Protein YABBY 3 | ||||
TrEMBL | B8BHT1 | 3e-69 | B8BHT1_ORYSI; Uncharacterized protein | ||||
STRING | OPUNC10G13730.1 | 9e-53 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 9e-31 | YABBY family protein |
Publications ? help Back to Top | |||
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