PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA031343-PA
Common NameGL2-1, OsI_033580, ROC3
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HD-ZIP
Protein Properties Length: 866aa    MW: 92940.1 Da    PI: 5.7242
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA031343-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.71.3e-20119174156
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +++ +++t++q++++e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  BGIOSGA031343-PA 119 KKRYHRHTAHQIQQMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 174
                       688999***********************************************998 PP
2START1302.9e-413345652206
                       HHHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS.................SCEEEEEEEECCSCHHHHHHHHHCCCGGC CS
             START   2 laeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv................dsgealrasgvvdmvlallveellddkeq 71 
                       la +aa++l ++  a+ep+Wv+ +       e           e ++                  + e  r+ +vv+m++ +lv  +ld + +
  BGIOSGA031343-PA 334 LAATAADQLARMCRAGEPLWVRQRgaevmavE-----------EHARMfswpvdgakqgdggavARAEGTRDNAVVIMNSINLVDAFLDAN-K 414
                       678999******************66554333...........3333344444445567778888888888999*****************.* PP

                       T-TT-S....EEEEEEEECTT........EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--...-TTSEE-EES CS
             START  72 Wdetla....kaetlevissg........galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe..sssvvRaell 148
                       W e ++    ka t++ i+ g        g+l lm+ae q+lsplv+ R++vf Ry+     +g+w+ivd   +  ++     ++svvR++++
  BGIOSGA031343-PA 415 WMELFPsivcKARTIQIINHGaasghlgsGTLLLMQAEVQFLSPLVAaREVVFFRYCVHnADEGSWAIVDFPAEGFEE--GllQASVVRCRRR 505
                       ***********************************************************9999*******55555555..356********** PP

                       SEEEEEEEECTCEEEEEEEE-EE--SSXX..HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
             START 149 pSgiliepksnghskvtwvehvdlkgrlp..hwllrslvksglaegaktwvatlqrqcek 206
                       pSg++i++++ng+s+v+wveh+++ g     + ++r  v sg+a+ga +w++ lqrqce+
  BGIOSGA031343-PA 506 PSGCIIQDMPNGYSRVVWVEHMEMVGEEKplQPVFRDYVASGAAFGATRWLSILQRQCER 565
                       ***********************98765449***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.61E-20103177IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.3E-22106170IPR009057Homeodomain-like
PROSITE profilePS5007117.167116176IPR001356Homeobox domain
SMARTSM003893.4E-19117180IPR001356Homeobox domain
PfamPF000463.6E-18119174IPR001356Homeobox domain
CDDcd000866.78E-19119177No hitNo description
PROSITE patternPS000270151174IPR017970Homeobox, conserved site
PROSITE profilePS5084844.182324568IPR002913START domain
SuperFamilySSF559611.65E-28327567No hitNo description
CDDcd088756.22E-101328564No hitNo description
SMARTSM002349.3E-23333565IPR002913START domain
PfamPF018522.0E-33334565IPR002913START domain
Gene3DG3DSA:3.30.530.202.0E-4447531IPR023393START-like domain
SuperFamilySSF559611.92E-15590762No hitNo description
SuperFamilySSF559611.92E-15808847No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 866 aa     Download sequence    Send to blast
MAGASSSADA LFASPLIPNP ALAGFMSSSA AMPFHHFSNA AATLIPKEEG LMGGLHVAKD  60
EEMDLEMDME LSGGSGSAHL DGLLSFADVD DDHKPQHSGH DQPPDAAQPS GAAGGNAKKK  120
RYHRHTAHQI QQMEALFKEC PHPDDKQRLK LSQELGLKPR QVKFWFQNRR TQMKAQQDRA  180
DNVILRAENE NLKSDNFRLQ AAIRNVVCPN CGHAAVLADM SYEEQQLRIE NARLKDELDR  240
LACIATRYGG GGGRQPVLST SALSCISAPP PVLMPPLDLD MNVYSRHFAE QAPVMGCGDL  300
IPPPVVPQHD GAAAYMGAMM APVQEQDKQL VVDLAATAAD QLARMCRAGE PLWVRQRGAE  360
VMAVEEHARM FSWPVDGAKQ GDGGAVARAE GTRDNAVVIM NSINLVDAFL DANKWMELFP  420
SIVCKARTIQ IINHGAASGH LGSGTLLLMQ AEVQFLSPLV AAREVVFFRY CVHNADEGSW  480
AIVDFPAEGF EEGLLQASVV RCRRRPSGCI IQDMPNGYSR VVWVEHMEMV GEEKPLQPVF  540
RDYVASGAAF GATRWLSILQ RQCERLASEL ARNIADLGVI RTPEARTNMM KLSQRMITTF  600
CANISASGTQ SWTALSDSTQ DTIRVTTRKN TEPGQPSGVI LTAVSTSWLP FTHQQVFELL  660
ADEQQRCQLE ILSNGGSLHE VAHIANGSHP RNCISLLRIN AASNSSQNVE LLLQESSTHP  720
DGGSLVVFAT VDVDAIQVTM SGEDPSYIPL LPLGFAIFPA TSPSPAAAPT ISSSTTTTTG  780
NGNGETSSTP PRNSSSNNNN ADELLPPNGC LLTVGMQVLA SAVPSAKLNL SSVTAINSHV  840
CNAIHQITAA LKGSAGGAGG EPASDQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.185490.0callus| flower| panicle| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329819620.0
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1016460.0AB101646.1 Oryza sativa Japonica Group Roc3 mRNA for GL2-type homeodomain protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613461.10.0homeobox-leucine zipper protein ROC3
RefseqXP_025876369.10.0homeobox-leucine zipper protein ROC3
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A0E0IWX00.0A0A0E0IWX0_ORYNI; Uncharacterized protein
STRINGONIVA10G22060.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78463441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7