PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA030881-PA
Common NameOsI_31603
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GeBP
Protein Properties Length: 418aa    MW: 44042.7 Da    PI: 7.3236
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA030881-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57365.99.2e-21188266298
            DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                       +++r+ws+ De+v+L+Gli++++k+g                 +s+kvs++ql++K+rrLK+K+++  ++ak+gke +f  +hd++i++l+kk
  BGIOSGA030881-PA 188 RPSRVWSQADELVILRGLITYRTKRG-----------------LSAKVSTTQLSDKVRRLKQKYQMLATRAKTGKE-VFPIPHDHNIYQLAKK 262
                       679**********************9.................889************************999999.9*************** PP

            DUF573  95 iWgs 98 
                       +Wg+
  BGIOSGA030881-PA 263 VWGT 266
                       **95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.8E-16190265IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MAPKRPAEEA DAAAAAAGGS ASEGSDAEAS AEAARGHGSS PSPSKTPPPA NPNPKSADAP  60
PSAVAAPASA AGSDSGAASD SPRAAGNPSG PRSIEVNSDS EDSALPLASD AYADQAAAAG  120
AGAGADSDDG NTSPLPPPRP SRAEAAAIKP ISSRPMTRRP AAPRAAPSRA PSATAAPPWH  180
HSAEHSKRPS RVWSQADELV ILRGLITYRT KRGLSAKVST TQLSDKVRRL KQKYQMLATR  240
AKTGKEVFPI PHDHNIYQLA KKVWGTMSTA GEGGGSGYDN ADAGESEEEQ YGRESDDDME  300
SGRDNRHRKN QRSVPVTMAN GNGTGIGAVN AIVRGRSEFE KGKDVYPYLW ETVEELSSQH  360
PTGAVFKKAF ELLEGSKAQV MEEKLRKFRL TEMRQQLRRM DLMKDTLSMV LDALEMAD
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO89267540.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611802.10.0STOREKEEPER protein
TrEMBLB8BCJ10.0B8BCJ1_ORYSI; Uncharacterized protein
STRINGORUFI09G13330.10.0(Oryza rufipogon)
STRINGOBART09G12390.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.14e-12DNA-binding storekeeper protein-related transcriptional regulator