PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA030605-PA
Common NameOsI_31070
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 366aa    MW: 38038 Da    PI: 5.4726
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA030605-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.91.2e-36761751100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       aCaaCk++rrkC++dC+la+yfpa+++++f n+h+lFG+s+++k+l+++p+e + dam++l++eA+ara+dPv Ga++v+ +l +q+e l++e
  BGIOSGA030605-PA  76 ACAACKYQRRKCNADCPLARYFPADEQRRFLNAHHLFGVSKIQKTLRDTPPELHADAMQALTFEANARASDPVGGAARVVVELCRQYEMLHTE 168
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       la+++++
  BGIOSGA030605-PA 169 LAAVQHH 175
                       ****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.77175176IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-3376173IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MTASSSTTNS SSSVSTADTS SSNPPPQHAL HRQHIARSSA SSGGGGAAAP LPPRAPPRVG  60
VGGGGGGGGG VGQSQACAAC KYQRRKCNAD CPLARYFPAD EQRRFLNAHH LFGVSKIQKT  120
LRDTPPELHA DAMQALTFEA NARASDPVGG AARVVVELCR QYEMLHTELA AVQHHLKLCR  180
QQHAAAAAAA ANDQLVANVD PLADPAAEML FAGAVVPNQN DDAMVDAFYA DQQTAGDGDQ  240
EQYLVKDEAL AAQPPPQQPY EYLNYGTAGD EGSSHAWYTG NGGDADASPP MGLSDQLQQC  300
QIGAAPPFDV KPELPATMEH GGSVFVEQPE QKILPAAGSS SSAAAHCQLE LGCSSNAWKV  360
GTHVIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-20721767111LOB family transfactor Ramosa2.1
5ly0_B1e-20721767111LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.531820.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329812560.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611163.20.0protein IAL1
TrEMBLA2Z0E50.0A2Z0E5_ORYSI; Uncharacterized protein
STRINGONIVA09G06600.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP182931010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72980.14e-30LOB domain-containing protein 7