PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA030019-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 317aa    MW: 35549 Da    PI: 5.1888
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA030019-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.97.6e-1670119154
               AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                       s+y+GVr++  +g+W+AeIrd +     r  r ++g+f ++eeAa+a+ a  ++++
  BGIOSGA030019-PA  70 SKYRGVRRRA-WGKWAAEIRDpV-----RkSRKWIGTFNSEEEAAAAYLAQSNQFH 119
                       89*****777.**********44.....55******************88766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.45E-1470103No hitNo description
PfamPF008471.1E-970113IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-1670123IPR016177DNA-binding domain
SMARTSM003803.3E-1471125IPR001471AP2/ERF domain
PROSITE profilePS5103218.6571128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-2071113IPR001471AP2/ERF domain
PRINTSPR003671.5E-87283IPR001471AP2/ERF domain
PRINTSPR003671.5E-894110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MVPSSRKVRV FCSDPDATDS SDEDDQNKKE RRFSREILIP MENSKASKPV KTLVQCGTKT  60
VKDSEKEPTS KYRGVRRRAW GKWAAEIRDP VRKSRKWIGT FNSEEEAAAA YLAQSNQFHE  120
ELMALKIQSS VSEQEDLSSS VTISCVSSSQ SCDQKIQAKP QEHKRVSVVV NRETVEQKFK  180
AQPQAQKIKA QPEVQKRVSV KISHETEDEH LLNLPSTPKG KEISMGAVLG RIDEIPVSNC  240
VGHIDEFPPD DFTRLADAFP VSDFIGMADV PLGDDYIGLA DISHLPLPIT DLKFDLNAEL  300
NWDGFDFASL EQELNCL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.548310.0callus| flower| leaf| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329857840.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8311650.0CT831165.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI221K24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651273.10.0ethylene-responsive transcription factor ERF117
RefseqXP_015651274.10.0ethylene-responsive transcription factor ERF117
RefseqXP_015651275.10.0ethylene-responsive transcription factor ERF117
RefseqXP_015651276.10.0ethylene-responsive transcription factor ERF117
TrEMBLQ0J2R60.0Q0J2R6_ORYSJ; Os09g0309700 protein
STRINGOS09T0309700-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50203763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.13e-17ERF family protein