 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | BGIOSGA029897-PA | ||||||||
| Common Name | OsI_31077 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
| Family | Trihelix | ||||||||
| Protein Properties | Length: 1309aa MW: 147277 Da PI: 6.1725 | ||||||||
| Description | Trihelix family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | trihelix | 37.6 | 5.6e-12 | 24 | 84 | 1 | 70 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70
rW++qe++aLi++r+em++++r++ k+++ g++rs+k+Ckek+e+++k yk +k
BGIOSGA029897-PA 24 RWSRQETQALIKIRSEMDDAFRDA---------TMKALAGLGYRRSAKRCKEKFEKVHKIYKHTKSAGAP 84
8*********************98.........4567899***********************9976655 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF13837 | 1.7E-8 | 23 | 88 | No hit | No description |
| CDD | cd12203 | 8.20E-16 | 23 | 79 | No hit | No description |
| SuperFamily | SSF52540 | 4.09E-41 | 491 | 747 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Gene3D | G3DSA:3.40.50.300 | 2.1E-7 | 519 | 656 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Pfam | PF00931 | 2.3E-22 | 528 | 673 | IPR002182 | NB-ARC |
| PRINTS | PR00364 | 1.1E-10 | 533 | 548 | No hit | No description |
| PRINTS | PR00364 | 1.1E-10 | 608 | 622 | No hit | No description |
| PRINTS | PR00364 | 1.1E-10 | 683 | 697 | No hit | No description |
| SuperFamily | SSF52058 | 3.4E-33 | 815 | 1055 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.80.10.10 | 2.0E-16 | 837 | 1050 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| SuperFamily | SSF52058 | 3.4E-33 | 1104 | 1296 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.80.10.10 | 4.3E-14 | 1105 | 1301 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| PRINTS | PR00364 | 1.1E-10 | 1161 | 1177 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0043531 | Molecular Function | ADP binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 1309 aa Download sequence Send to blast |
MQERMSNKEE YATSKEAASG SSSRWSRQET QALIKIRSEM DDAFRDATMK ALAGLGYRRS 60 AKRCKEKFEK VHKIYKHTKS AGAPRQESLK APVVSSGCPV VAPSPSMASG AVELHHSQPM 120 NLDNTSSFLP MSESAELESS KGCEEDMMMI TGEIGSKSNR SSGGGKELAA LFDGFMKQVV 180 ERQEEMQRRF LEALEKREAE RRAREEAERA AREEAWRRQE MARLNREHEQ QRAQDHAAII 240 AFLHRIGQPP PGVISTAAAQ PFPWPLQQEL AHAPPFQQQP KHKETAQQDD AWASLSLHPS 300 KSLTDEPSVL NYATPGTVES TTSTSTQHPI ATPDSAQNTH DPTTFQHSPS FVTWTPDEFH 360 SPGFNSSKQD ERFVLETTLR GMYELIKLAE CWVHKDYSIA NLLQEAKDTV YCAEDLLDEL 420 NYYELQDGVG FSANRSSCPE FSDIKMTEIH GKLNSLKEQM GHLGLHDMQP QHFIFESVSQ 480 KYGNLMYDRT NFGYQEELQV LIDSFILDKN SLTSEQVSEV PSSGRAGQKN LSVLTIVGDG 540 GIGKTALAHC SFNDQKVQDH FDLLVWICVS DGFDDKKLIK RLAWAIAESE MKSDDLICLQ 600 RVLTNGMIHH SRRLLLVLDD LQEDVCQEYY LGWESFLAPL KCASPGSMVL VTTRSMKVAE 660 HISSVCLQLA EVECIGGKIA ARLNGSPLGA KIVGCLLNLK LDAVYWKSIL ESELWELGHH 720 KETRIWPALH LSYQYLPFHL KRCFSFCSMY PKSHEFDAET LVDSWVAVGL VVSNGSVPAV 780 DIGHEYFDQL VRRSFFQISP TSSSSRHAYV MQGLLYETAQ KISTNECFVI KDSSDLLRIP 840 PKVRHVSILH FSGLSSSDLE SLHKYKTLRS VVCISIDSDV ITTSVLETWF CHLTNIRMLR 900 FISCRLKELL GNVGNLILLR YLDISSCDFE ALPDSFWRLR NLEILDAQNC RFDSVPKDIV 960 KLVKLRKARL RSDLNNQLGH VPGVGNLIYL QDMPYYAVDD TPGRGIQELK NLNNLRGALE 1020 ISGLHNVTSK EQAVEADLDK KTHLNTLTLS WHDSIRPDKH NGEQEMEVLE SLRPSPSIKN 1080 LEVRFYMGSG FHPSWLLDDE PNSSRLESLS ISSCPNIASL FITVTGSSSR GSSPVVFRSL 1140 TKLSVTWCRK LMSLDNLLQP ELLPEIKVIR ISNCEELASL PTNQLIKFTH LEDLEVSHCW 1200 SLSWEQGLTL PRSLKSLKLE ACGELTDSVL RCGLRELPVL VSLELQFCSG VECIGGEIWS 1260 EMPSLQRLKI FCCQELSSIG GEESIARVES VDIRHCPKLR ELEQPFQRG |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j5t_C | 1e-35 | 375 | 1096 | 34 | 758 | Disease resistance RPP13-like protein 4 |
| 6j5t_F | 1e-35 | 375 | 1096 | 34 | 758 | Disease resistance RPP13-like protein 4 |
| 6j5t_G | 1e-35 | 375 | 1096 | 34 | 758 | Disease resistance RPP13-like protein 4 |
| 6j5t_L | 1e-35 | 375 | 1096 | 34 | 758 | Disease resistance RPP13-like protein 4 |
| 6j5t_O | 1e-35 | 375 | 1096 | 34 | 758 | Disease resistance RPP13-like protein 4 |
| 6j5u_A | 1e-35 | 375 | 1096 | 34 | 758 | Disease resistance RPP13-like protein 4 |
| 6j5v_A | 1e-35 | 375 | 1096 | 34 | 758 | Disease resistance RPP13-like protein 4 |
| 6j5w_A | 1e-35 | 375 | 1096 | 34 | 758 | Disease resistance RPP13-like protein 4 |
| 6j6i_C | 1e-35 | 375 | 1096 | 34 | 758 | Disease resistance RPP13-like protein 4 |
| 6j6i_F | 1e-35 | 375 | 1096 | 34 | 758 | Disease resistance RPP13-like protein 4 |
| 6j6i_G | 1e-35 | 375 | 1096 | 34 | 758 | Disease resistance RPP13-like protein 4 |
| 6j6i_L | 1e-35 | 375 | 1096 | 34 | 758 | Disease resistance RPP13-like protein 4 |
| 6j6i_O | 1e-35 | 375 | 1096 | 34 | 758 | Disease resistance RPP13-like protein 4 |
| Search in ModeBase | ||||||
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Os.59627 | 0.0 | flower| panicle | ||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | CP012617 | 0.0 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015612015.1 | 0.0 | putative disease resistance protein RGA3 | ||||
| TrEMBL | B8BEW2 | 0.0 | B8BEW2_ORYSI; Uncharacterized protein | ||||
| STRING | OMERI09G05760.1 | 0.0 | (Oryza meridionalis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP14099 | 6 | 9 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G76890.2 | 2e-16 | Trihelix family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|