PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA029658-PA | ||||||||
Common Name | OsI_31587 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 227aa MW: 24507.7 Da PI: 8.9359 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.3 | 2.7e-08 | 27 | 80 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C......TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.as...kapskKlsKaeiLekAveYIksL 54 +e+ErrRR++++ +L +l+P+ + k ++ + L +A YIk+L BGIOSGA029658-PA 27 RKEMERRRRQDMKGLCVKLASLIPNeHCsksKMQGATGTQLGSLDEAAAYIKKL 80 579**********************66599888888899999**********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.105 | 22 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-11 | 26 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.5E-6 | 28 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-5 | 28 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-9 | 28 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MDQEKADGGG RRRRSSGSGA SSTAAERKEM ERRRRQDMKG LCVKLASLIP NEHCSKSKMQ 60 GATGTQLGSL DEAAAYIKKL KERVDELHHK RSMMSITSSR CRSGGGVPAA AAGQSTSGGG 120 GEEEEDMTRT TAAAAVVEVR QHVQEGSLIS LDVVLICSAA RPVKFHDVIT VLEEEGADII 180 SANFSLAAHN FYYTIYSRAF SSRIGIEASR ISERLRALAM TTEVIRS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.10300 | 0.0 | stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012617 | 0.0 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647775.1 | 1e-108 | transcription factor bHLH167 isoform X1 | ||||
TrEMBL | A2Z1V3 | 1e-163 | A2Z1V3_ORYSI; Uncharacterized protein | ||||
STRING | OBART01G00600.1 | 1e-114 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP829 | 36 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10586.1 | 6e-14 | bHLH family protein |