PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | BGIOSGA029460-PA | ||||||||
Common Name | OsI_31996 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 236aa MW: 25767.9 Da PI: 5.8168 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.6 | 8.1e-07 | 77 | 118 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + RR+ri +++ L+ l+P + +k Ka iL + ++Y++sLq BGIOSGA029460-PA 77 KVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 118 78******************9....555*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.93E-14 | 65 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.627 | 67 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-5 | 73 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.3E-13 | 75 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.97E-8 | 77 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 236 aa Download sequence Send to blast |
MAGFSHLPQQ MEHGLITNNG FLFCHGSHGG AATTTAPAIP EDASMETSSV VLDTSPQDKK 60 RKPREEDTAS LNSAHSKVRR ERISERMRML QALVPGCDKV TGKALILDEI INYVQSLQNQ 120 VEFLSMRIAS LSPVLYGFGI DSDAFSDHSQ KMEGMFHEAV AIPASVLNRG SSPAQSHAIM 180 DTSNTSPTPY TLQVQGGSNN NSLSQDNGSY IMQTVGEPRQ ELFNQVVLNN YMCSFQ |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.88028 | 0.0 | leaf| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 32976206 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK066188 | 0.0 | AK066188.1 Oryza sativa Japonica Group cDNA clone:J013053A18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611378.1 | 1e-169 | transcription factor bHLH137 | ||||
Refseq | XP_015611379.1 | 1e-169 | transcription factor bHLH137 | ||||
TrEMBL | A2Z2Z7 | 1e-176 | A2Z2Z7_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI09G17270.2 | 1e-168 | (Oryza rufipogon) | ||||
STRING | OS09T0510500-01 | 1e-168 | (Oryza sativa) | ||||
STRING | ORGLA09G0124100.1 | 1e-168 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2358 | 37 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G50915.2 | 1e-32 | bHLH family protein |