PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA028831-PA

Common Name

OsI_29562

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bZIP

Protein Properties

Length: 310aa MW: 32743.9 Da PI: 5.2642

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA028831-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.9	6.8e-16	233	284	5	56
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L+++N++L+k+ ee+ ++ BGIOSGA028831-PA 233 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKEQNMELQKKQEEIMEMQ 284 79********************************************999985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-14	229	293	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.208	231	282	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.63E-11	233	283	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.6E-15	233	282	No hit	No description
Pfam	PF00170	3.0E-14	233	285	IPR004827	Basic-leucine zipper domain
CDD	cd14707	4.94E-25	233	285	No hit	No description
PROSITE pattern	PS00036	0	236	251	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MDELLRSIWT AEESQAMASA SASAAAAAAE GGLQRQGSLT LPRTLSVKTV DEVWRDFERE 60 ASPGAAAADG GGGGGGEQQQ PRRQPTLGEM TLEEFLVRAG VVRENTAAAA AMVAAAAAPP 120 VAPRSIPAVN NSSIFFGNYG GVNDAAAAAA GAMGFSPVGI GDPTMGNGLM SGVAGIGGGA 180 ITVAPVDTSV GHMDSAGKGD GDLSSPMAPV PYPFEGVIRG RRSGGNVEKV VERRQRRMIK 240 NRESAARSRA RKQAYTMELE AEVQKLKEQN MELQKKQEEI MEMQKNFFPE MQKNQLENLE 300 LHCWCLPIFH

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.4379	0.0	panicle\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	33087068	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, leaves and embryos. {ECO:0000269\|PubMed:10611387}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269\|PubMed:10611387}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA). {ECO:0000269\|PubMed:10611387}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT037117	0.0	KT037117.1 Oryza sativa Indica Group cultivar Nonabokra abscisic acid inducible bZIP protein (TRAB1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650926.1	1e-156	bZIP transcription factor TRAB1
Swissprot	Q6ZDF3	1e-157	TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBL	B8BBL1	0.0	B8BBL1_ORYSI; Uncharacterized protein
STRING	OPUNC08G15700.1	1e-174	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP706	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	3e-36	abscisic acid responsive elements-binding factor 2

Publications ? help Back to Top
Kagaya Y,Hobo T,Murata M,Ban A,Hattori T Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1. Plant Cell, 2002. 14(12): p. 3177-89 [PMID:12468735] Kobayashi Y, et al. Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors. Plant J., 2005. 44(6): p. 939-49 [PMID:16359387] Kobayashi F,Maeta E,Terashima A,Takumi S Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings. Physiol Plant, 2008. 134(1): p. 74-86 [PMID:18433415]