PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA028511-PA
Common NameOsI_28909
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family G2-like
Protein Properties Length: 358aa    MW: 39109 Da    PI: 8.6261
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA028511-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.33.6e-3396150155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       ++rlrWt+eLH+rFveav+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  BGIOSGA028511-PA  96 RQRLRWTNELHDRFVEAVTQLGGPDRATPKGVLRIMGVPGLTIYHVKSHLQKYRL 150
                       58****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.75793153IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.9E-3295151IPR009057Homeodomain-like
SuperFamilySSF466894.48E-1895150IPR009057Homeodomain-like
TIGRFAMsTIGR015576.7E-2697151IPR006447Myb domain, plants
PfamPF002491.0E-898149IPR001005SANT/Myb domain
PfamPF143791.9E-23182228IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MTFLRPRQQD FKRRLRSRMC HLQQPKVAAS LGRPPVALLP TLMATRLGGM EASMPNPISS  60
SGQTHGNPTA HEQMELGNNA IVPSNGGNNN PNMAARQRLR WTNELHDRFV EAVTQLGGPD  120
RATPKGVLRI MGVPGLTIYH VKSHLQKYRL AKYIPDPSAD DNKDEDKDPG NLLSALEGSS  180
GMQISEALKL QMEVQKRLHE QLEVQRQLQL RIEAQGKYLQ KIIEEQQRVI GAGASRATSS  240
EQLPDSVKTN PPTPVPISES PVQGASRSKN SQSQVEPTKS PSHDDALPCG EPLTPDSSCR  300
PGSPTLSPKH ERAAKRQRGS DAGDVTAFAD GEFVLPHGIF ESSTGSEFQE CSMPYSGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-2396153158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-2396153158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-2396153158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-2396153158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043960.0AP004396.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0404D10.
GenBankAP0044590.0AP004459.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0410E11.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648505.10.0myb family transcription factor PHL7
SwissprotQ9SJW07e-91PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA2YU960.0A2YU96_ORYSI; Uncharacterized protein
STRINGONIVA09G02590.20.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22203896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.12e-77G2-like family protein