PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA027658-PA
Common NameOsI_27805
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 389aa    MW: 42753.4 Da    PI: 6.6864
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA027658-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-1797141147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rgr+T+eE++l++ +++  G++ W+ Ia++++ gRt++++k++w+++
  BGIOSGA027658-PA  97 RGRFTAEEEKLIISLHAIVGNR-WAHIASHLP-GRTDNEIKNYWNSW 141
                       89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-1177103IPR009057Homeodomain-like
SuperFamilySSF466892.01E-2177148IPR009057Homeodomain-like
PROSITE profilePS500904.0547891IPR017877Myb-like domain
PROSITE profilePS5129425.93292146IPR017930Myb domain
SMARTSM007172.1E-1796144IPR001005SANT/Myb domain
PfamPF002494.4E-1697141IPR001005SANT/Myb domain
CDDcd001672.70E-1399142No hitNo description
Gene3DG3DSA:1.10.10.602.0E-20104142IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MAASAEEEEH RREKRWIEAE RGEAACVGDG GGGDAGRGRP SDGGERGMRR GRGRRRTSAS  60
GTSGGGARRG EENWCLQRCG KSCRLRWINY LRPDIRRGRF TAEEEKLIIS LHAIVGNRWA  120
HIASHLPGRT DNEIKNYWNS WIKKKIRKPA AAAAAATTTS PNNPPPCSTV TSDHHHLPPP  180
AFGGADHHLQ LDAIINQNLI SSLPPKLATG DDSPPAVPGL PHHCPLFMFD TTTTGAGGAI  240
SPPPPSSLIP THLHHHHHPF IASFTAAMAA DTPSYLPPLV DGMAAMGAAM DCSLEDGQTA  300
AAMAATNGYY QHHQKHQQLE IELEEEEQRQ LGHHHHQHHH EHEHENHQWD EEEAQHLLMW  360
DQEVLTSSNL EAMQSGAHSL LFMGPNDHD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-216814624108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.498300.0root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379884710.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1118080.0AK111808.1 Oryza sativa Japonica Group cDNA clone:J013114D05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648990.10.0transcription factor MYB61
TrEMBLB8BAP30.0B8BAP3_ORYSI; Uncharacterized protein
STRINGORUFI08G03380.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60323757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.17e-45myb domain protein 103