PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA027293-PA
Common NameOsI_28575
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 309aa    MW: 30681.2 Da    PI: 9.0292
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA027293-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012111133123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC++C + F ++  L  H++ H
  BGIOSGA027293-PA 111 FKCNYCQRKFYTSQALGGHQNAH 133
                       89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.28E-6108138No hitNo description
PROSITE profilePS5015711.572111138IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MASSSQTTVS MEVAMKVEGS GGGGGGGEEG EVVAKKEEEV AAAAAAMELD LLGALRAEEV  60
MPAEKGKAAV VMVGEAVAPS VEERASAVAA AAANGGGGGG GGGGEARRRL FKCNYCQRKF  120
YTSQALGGHQ NAHKRERSLA KRGAAVAAAA AAAGRGLYGF GDPFVPHHLR FRSLWPYPAA  180
AGAARTTPFL GRGSASAAAA AAAPAAPFYG AVHHGWSAQP PSSLQGIAAR HAAAERPVYP  240
ADAFGYGAGS SSSRATGAPA SAGLRWAEGG GSGTIHSAAA AAAGEQHTAA EVKAQEEMSS  300
SKIDLTLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025875762.11e-147zinc finger protein 4
TrEMBLA2YTD20.0A2YTD2_ORYSI; Uncharacterized protein
STRINGONIVA08G09500.11e-156(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130642230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.17e-17zinc-finger protein 1