PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA026775-PA | ||||||||
Common Name | OsI_29655 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 180aa MW: 18569.6 Da PI: 6.7981 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.2 | 1.9e-10 | 138 | 167 | 1 | 30 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 1 rrrahnerErrRRdriNsafeeLrellPka 30 +r++h ++Er+RR+++N+ ++ Lr+l+P + BGIOSGA026775-PA 138 QRMTHIAVERNRRKQMNEYLAVLRSLMPAS 167 79**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.22E-9 | 131 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.29E-8 | 136 | 171 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.6E-9 | 136 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.223 | 137 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.5E-8 | 138 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MALEAVVFSE GYYFGCGGAM AAEAAAGGAW SWSHGYGGGV DQGKGAMELV VDDGVVNAFW 60 DGGGGGASSS PVMAAVSGFI EEPDGGNSSV ADAAPPPEHG GASVVGRDGS AAAPAAAAGR 120 RKRRRARTVK NREEVESQRM THIAVERNRR KQMNEYLAVL RSLMPASYVQ RGSSSQFIST |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 120 | 124 | RKRRR |
2 | 138 | 149 | RMTHIAVERNRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.55174 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32992835 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107626 | 0.0 | AK107626.1 Oryza sativa Japonica Group cDNA clone:002-131-D10, full insert sequence. | |||
GenBank | HQ858861 | 0.0 | HQ858861.1 Oryza sativa Japonica Group isolate UT1670 bHLH transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649413.1 | 4e-90 | transcription factor bHLH96 | ||||
TrEMBL | B8BBT9 | 1e-125 | B8BBT9_ORYSI; Uncharacterized protein | ||||
STRING | OS08T0483900-01 | 1e-89 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP741 | 38 | 156 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22490.1 | 3e-22 | bHLH family protein |