PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA026655-PA
Common NameOsI_29915
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ARF
Protein Properties Length: 1031aa    MW: 115008 Da    PI: 6.796
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA026655-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.42.3e-2247148199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   +
  BGIOSGA026655-PA  47 FCKTLTASDTSTHGGFSVPRRAAERIfprldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI--R 135
                       99*****************************954.4444.49************************************************..4 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                       + +++l+++++r+
  BGIOSGA026655-PA 136 DAKQQLLLGIRRA 148
                       5677789999997 PP
2Auxin_resp117.41.2e-38173256183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaa+++s F+++YnPrastseFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+ S+Wr+++
  BGIOSGA026655-PA 173 AAHAAANNSQFTIYYNPRASTSEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKTSHWRNIQ 256
                       79**********************************9********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-4237176IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-4040162IPR015300DNA-binding pseudobarrel domain
CDDcd100171.37E-1846136No hitNo description
SMARTSM010191.5E-2047149IPR003340B3 DNA binding domain
PfamPF023621.5E-2047148IPR003340B3 DNA binding domain
PROSITE profilePS5086311.64647149IPR003340B3 DNA binding domain
PfamPF065074.6E-33173256IPR010525Auxin response factor
PfamPF023094.2E-10903998IPR033389AUX/IAA domain
PROSITE profilePS5174526.775913997IPR000270PB1 domain
SuperFamilySSF542774.12E-7925992No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1031 aa     Download sequence    Send to blast
MEADPDTDEV YARMTLQPVS NVTQCDKETL LASELALKQT RPQTEFFCKT LTASDTSTHG  60
GFSVPRRAAE RIFPRLDFSM QPPAQELQAR DLHDNVWTFR HIYRGQPKRH LLTTGWSLFV  120
SGKRLLAGDS VLFIRDAKQQ LLLGIRRANR QPTNLSSSVL SSDSMHIGIL AAAAHAAANN  180
SQFTIYYNPR ASTSEFVIPF AKYQKAVYGN QLSLGMRFRM MFETEESGTR RYMGTITGIS  240
DLDPVRWKTS HWRNIQVAWD EAAPTERRTR VSLWEIEPII APFFIYPSPL FTAKRPRLPG  300
MTDDETEMDG LLKRAMPWVG EEICKKDLNI QNSVVPGLNL AQWMNMQHSS SLPGTVVQPE  360
LLNSLSGKPV QNLAAADLSR QISFHPQFLQ QNNIQFNTAL VPQQNQQTEQ LAKVIPTPNQ  420
LGSVIIPQKV VQDCNSEQRQ HVVTQPVQGS QPNINIPQPQ LVVQAQLQQP QVILQAQLQQ  480
PQVVVQAQLQ QTQPSVQSHT VLQGGLQQIQ LLQQQQPHVQ HQQIPQQLHH QQQQTQQLQP  540
VQQVQQSVQE HQQIKIQPVH VSMDASMNTQ VADHQMKLQL LKALQPQQPL ISEQQKMLLD  600
LQQQVINSQS APQQCVQVTN QAISLHNSNT IQYPTQQKVQ SHQVQDLTGN VIPNSKSDIA  660
TSMGASSLHV AGGRQLLKTD DVPSTSTSPS TNSNPVLLQS IPSSSKNQSL TTAGKTSQSS  720
VVLGPTIEQD TKPYQNVKQT VMIPKTTEQR PATGQDCINN NPQMDYLDTS SSATSVCLSQ  780
ADGSLQQNFP PSSFHQHHLL KDTVPDSEFE VTDPRNNLLF GVNIDGQLGL PLNADLLAND  840
IGTDKYMDQL PGNGISNFIS SKDSQQELSS SMISHSFGVA DMAFNSIDSA INDTPFLNRN  900
SRSAAGPAHQ RMRTYTKVHK RGAVGRSIDI NRYSGYDELK HDVARMFGIE GQLGDQNRVG  960
WKLVYEDHEK DVLLVGDDPW EDFVKCVRCI RILSPQEEMQ MRLVGDFGDS FLPNQACSSS  1020
DGGHPWRITG D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1261277115388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.482180.0leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO193520460.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0712970.0AB071297.1 Oryza sativa OsARF7b mRNA for auxin response factor 7b, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649755.10.0auxin response factor 21
SwissprotQ6YZW00.0ARFU_ORYSJ; Auxin response factor 21
TrEMBLB8B8U20.0B8B8U2_ORYSI; Auxin response factor
TrEMBLB9G1U50.0B9G1U5_ORYSJ; Auxin response factor
STRINGOBART08G20780.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-165auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]