PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA026544-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 142aa    MW: 15620.2 Da    PI: 11.5892
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA026544-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.4e-204395155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                      + ++GVr++ + grWv+e+r+p   g +  r ++g+f+taeeAa+a++aa+++l g
  BGIOSGA026544-PA 43 PVFRGVRRRGRAGRWVCEVRVP---GsRGDRLWVGTFDTAEEAARAHDAAMLALCG 95
                      579******************9...5445***********************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.1E-154395IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-1944104IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-2844105IPR001471AP2/ERF domain
PROSITE profilePS5103220.45544103IPR001471AP2/ERF domain
SMARTSM003804.9E-2244109IPR001471AP2/ERF domain
PRINTSPR003671.2E-54556IPR001471AP2/ERF domain
CDDcd000181.70E-1957105No hitNo description
PRINTSPR003671.2E-56985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MEKNTTAMGQ LMSSSATTAA TATGPASPKR PAGRTKFQET RHPVFRGVRR RGRAGRWVCE  60
VRVPGSRGDR LWVGTFDTAE EAARAHDAAM LALCGASASL NFAESAWLXX XXXXXXXXXX  120
XXXXXXXXXX XXXXXXXXXX XX
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649414.14e-71dehydration-responsive element-binding protein 1J
SwissprotQ0J3Y75e-72DRE1J_ORYSJ; Dehydration-responsive element-binding protein 1J
TrEMBLI1QLA17e-70I1QLA1_ORYGL; Uncharacterized protein
STRINGORGLA08G0220200.11e-70(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.12e-16dehydration response element B1A