PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA026514-PA
Common NameOsI_30208
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 531aa    MW: 54878.1 Da    PI: 9.6257
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA026514-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.3e-055375123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ C+k F r  nL+ H r H
  BGIOSGA026514-PA 53 FVCEVCNKGFQREQNLQLHRRGH 75
                      89*******************88 PP
2zf-C2H213.20.00026129151123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC +C+k++  +s+ k H +t+
  BGIOSGA026514-PA 129 WKCDKCNKRYAVQSDWKAHSKTC 151
                       58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF121712.6E-55275IPR022755Zinc finger, double-stranded RNA binding
Gene3DG3DSA:3.30.160.601.6E-55375IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.54E-85375No hitNo description
SMARTSM003550.00415375IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.0945375IPR007087Zinc finger, C2H2
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
SMARTSM0035514094124IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-5117150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.54E-8124149No hitNo description
SMARTSM00355110129149IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MAAASSAHYF GLGEPQMQQQ QQQPPLQNNA AAPVAATPPP KKKRNQPGNP SKFVCEVCNK  60
GFQREQNLQL HRRGHNLPWK LKQKNPKETR RRVYLCPEPS CVHHDPSRAL GDLTGIKKHY  120
SRKHGEKKWK CDKCNKRYAV QSDWKAHSKT CGTREYRCDC GTLFSRRDSF ITHRAFCDAL  180
AQESGRIMPP MGAALYAAAG AGMAIGGLTG MAASHQLQPF QDHSSAITTA ANAAAQFDHL  240
MATSSAAAGS PAFRAAQPTS SSSSPFYLGG GGDDGQAHTS LLHGKPAFHG LMQLPEQQGS  300
NGGGLLNLSY FSGGNGGHHH HHQEGRLVFP DQFNGVAAGN GARAGSGEHG NSGNNADSGS  360
IFSGNMMGGG GGFSSLYSSS DQTVPPPQMS ATALLQKAAQ MGATTSSGGA GSVNSLLRGL  420
GSGGGGGALN GKPAGAAGFI MSGESSSRST ASQTAENESQ LRELMMNTLS ATGGGTGAGT  480
VFVGGGFPGV DDGKLSTRDF LGVSGGAPGL QLRHGGAAGM GMAGSLDQEM K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-33125187365Zinc finger protein JACKDAW
5b3h_F2e-33125187365Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.615360.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166323790.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaf tissues. {ECO:0000305|PubMed:22898356}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0721280.0AK072128.1 Oryza sativa Japonica Group cDNA clone:J013124C13, full insert sequence.
GenBankAK0998300.0AK099830.1 Oryza sativa Japonica Group cDNA clone:J013105K20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650033.10.0protein indeterminate-domain 6, chloroplastic
RefseqXP_025883278.10.0protein indeterminate-domain 6, chloroplastic
RefseqXP_025883279.10.0protein indeterminate-domain 6, chloroplastic
RefseqXP_025883280.10.0protein indeterminate-domain 6, chloroplastic
RefseqXP_025883281.10.0protein indeterminate-domain 6, chloroplastic
SwissprotQ9ZUL31e-104IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA2YXZ30.0A2YXZ3_ORYSI; Uncharacterized protein
STRINGORUFI08G25660.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.23e-93C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]