PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA026480-PA
Common NameOsI_30289
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 387aa    MW: 41288.5 Da    PI: 8.0423
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA026480-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.43.3e-07206228123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C+ Cgk F+r  nL+ H+r H
  BGIOSGA026480-PA 206 HYCQVCGKGFKRDANLRMHMRAH 228
                       68*******************99 PP
2zf-C2H212.20.00054298321123
                       EEETTTT.EEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                       y+C+ Cg k+Fs  s+L++H + +
  BGIOSGA026480-PA 298 YVCNRCGrKHFSVLSDLRTHEKHC 321
                       9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.25E-6204231No hitNo description
SMARTSM003550.0034206228IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.653206233IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.3E-7206233IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280208228IPR007087Zinc finger, C2H2
SMARTSM00355140260293IPR015880Zinc finger, C2H2-like
SMARTSM0035536298324IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MIPGGGGGGG GGGGGISPYL VQSQHGHGGG VDGMEMEEGG GFMGEQPQCH PLLYNLSVLK  60
DRVQQLHPLV GLAVAHNAHA HGPLDVSAAD AIIQEIVAAA SSMMYAFQLL CDLGTAPTTA  120
PSQETAAASA VVVKNNDHAA DAGQMEDDHL MQQQWQQNGS RQHDYSSHAH APPVFHSETA  180
APAGATSATD TIIELDAAEL LAKYTHYCQV CGKGFKRDAN LRMHMRAHGD EYKSKAALSN  240
PTKLLAKGGD ETMAAAARKY SCPQEGCRWN RRHAKFQPLK SVICAKNHYK RSHCPKMYVC  300
NRCGRKHFSV LSDLRTHEKH CGDHRWLCSC GTSFSRKDKL IGHVSLFAGH QPVMPLDAPR  360
AGKRQRSSSA SVAGNIDDTT GIGMGAA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.516570.0callus| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329733080.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in roots (e.g. root tips and lateral roots), leaves (e.g. at the edge of mature leaves, possibly in hydathodes, and in vascular bundles), flowers (e.g. floral filaments), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649514.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
SwissprotQ0WT241e-101STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLB8B9L40.0B8B9L4_ORYSI; Uncharacterized protein
STRINGOS08T0562300-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-104C2H2 family protein