PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA026413-PA

Common Name

OsI_27375

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

WOX

Protein Properties

Length: 262aa MW: 27587.8 Da PI: 8.4515

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA026413-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	48.1	2e-15	20	80	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ BGIOSGA026413-PA 20 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLerfgAVGDANVFYWFQNRRSRSRR 80 89***************99***********************************997 PP
2	Wus_type_Homeobox	107.3	9.1e-35	19	82	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q BGIOSGA026413-PA 19 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRRSRSRRRQ 82 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.256	16	81	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.7E-14	17	87	IPR009057	Homeodomain-like
SMART	SM00389	3.9E-6	18	85	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.3E-8	20	88	IPR009057	Homeodomain-like
Pfam	PF00046	3.7E-13	20	80	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MDGGHSPDRH AAAAAGEPVR SRWTPKPEQI LILESIFNSG MVNPPKDETV RIRKLLERFG 60 AVGDANVFYW FQNRRSRSRR RQRQLQAQAQ AAAAAASSGS PPTASSGGLA PGHAGSPASS 120 LGMFAHGAAG YSSSSSSSWP SSPPSVGMMM GDVDYGGGGD DLFAISRQMG YMDGGGGSSS 180 SAAAGQHQQQ QLYYSCQPAT MTVFINGVAT EVPRGPIDLR SMFGQDVMLV HSTGALLPAN 240 EYGILLHSLQ MGESYFLVTR SS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.51714	0.0	callus\| flower\| root

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32983255	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: In crown roots, mainly expressed after crown roots emergence but barely in crown root initials. {ECO:0000269\|PubMed:26307379}.
Uniprot	TISSUE SPECIFICITY: Present in crown roots. {ECO:0000269\|PubMed:26307379}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in crown root development (PubMed:26307379, PubMed:29740464). Promotes the development of crown roots (both initiation and elongation), main components of the fibrous root system (PubMed:26307379, PubMed:29740464). Regulates the expression of genes required for crown root development, and hormone-responsive genes involved in cytokinin signaling (e.g. RR1, RR2, RR3 and RR4), and auxin signaling (e.g. IAA5, IAA11, IAA23 and IAA31) (PubMed:26307379). Functions dowstream of the auxin biosynthetic genes YUCCA1 in the promotion of crown root development (PubMed:29740464). {ECO:0000269\|PubMed:26307379, ECO:0000269\|PubMed:29740464}.
UniProt	Transcription factor which may be involved in developmental processes. Promotes the development of crown roots (both initiation and elongation), main components of the fibrous root system, by regulating the expression of genes required for crown root development and hormone-responsive genes involved in cytokinin (e.g. RR1, RR2, RR3 and RR4) and auxin (e.g. IAA5, IAA11, IAA23 and IAA31) signaling. {ECO:0000250\|UniProtKB:Q0D3I7}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK063503	0.0	AK063503.1 Oryza sativa Japonica Group cDNA clone:001-116-E11, full insert sequence.
GenBank	AK073232	0.0	AK073232.1 Oryza sativa Japonica Group cDNA clone:J033021B15, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015645719.1	0.0	WUSCHEL-related homeobox 11
Swissprot	B8B644	0.0	WOX11_ORYSI; WUSCHEL-related homeobox 11
Swissprot	Q0D3I7	0.0	WOX11_ORYSJ; WUSCHEL-related homeobox 11
TrEMBL	A0A0D3GV39	0.0	A0A0D3GV39_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0I5U2	0.0	A0A0E0I5U2_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0QCW8	0.0	A0A0E0QCW8_ORYRU; Uncharacterized protein
STRING	ORUFI07G27650.1	0.0	(Oryza rufipogon)
STRING	OS07T0684900-01	0.0	(Oryza sativa)
STRING	ONIVA07G26430.1	0.0	(Oryza nivara)
STRING	OBART07G26670.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1078	37	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	2e-36	WUSCHEL related homeobox 11

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhao Y, et al. The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling. Plant Cell, 2015. 27(9): p. 2469-83 [PMID:26307379] Zhang T, et al. The YUCCA-Auxin-WOX11 Module Controls Crown Root Development in Rice. Front Plant Sci, 2018. 9: p. 523 [PMID:29740464]