PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA026407-PA
Common NameOsI_27367
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 342aa    MW: 37040.9 Da    PI: 7.6954
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA026407-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.11.4e-5281351128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeel+ +yL+ ++++ ++++  +i++vdiyk++PwdLp+k+  +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk+++
  BGIOSGA026407-PA   8 LPPGFRFHPTDEELILHYLRSRATAGQCPV-PIIADVDIYKFDPWDLPSKAVYGESEWYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDKPIH 99 
                       79****************************.88***************77667899************************************* PP

               NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++ +ge vg+kk Lvfy+gr pkg+kt+W+mheyrl
  BGIOSGA026407-PA 100 DSaTGESVGVKKALVFYRGRPPKGTKTSWIMHEYRL 135
                       9988999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-645173IPR003441NAC domain
PROSITE profilePS5100560.5218173IPR003441NAC domain
PfamPF023653.8E-279135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MSSAATSLPP GFRFHPTDEE LILHYLRSRA TAGQCPVPII ADVDIYKFDP WDLPSKAVYG  60
ESEWYFFSPR DRKYPNGIRP NRAAGSGYWK ATGTDKPIHD SATGESVGVK KALVFYRGRP  120
PKGTKTSWIM HEYRLAADPL AAAANTYKPS SSSRFRNVSM RLDDWVLCRI YKKSGQASPM  180
MPPLAADYDH DEPSGVLDDA YSFYAPPMIS TTLIPKLPKI PSISELFDEH ALAQIFDAAA  240
DPPADHHQHA LAVHPSLNQL LGVGDNFLAE CYPSTASTAT VAGGKRKASP AGDYAGGGHT  300
PAKRLNGSCF DVAPQSVVGG LQATPSSVLA GLNHQMLPPQ LF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-72717816170NO APICAL MERISTEM PROTEIN
1ut4_B9e-72717816170NO APICAL MERISTEM PROTEIN
1ut7_A9e-72717816170NO APICAL MERISTEM PROTEIN
1ut7_B9e-72717816170NO APICAL MERISTEM PROTEIN
3swm_A9e-72717819173NAC domain-containing protein 19
3swm_B9e-72717819173NAC domain-containing protein 19
3swm_C9e-72717819173NAC domain-containing protein 19
3swm_D9e-72717819173NAC domain-containing protein 19
3swp_A9e-72717819173NAC domain-containing protein 19
3swp_B9e-72717819173NAC domain-containing protein 19
3swp_C9e-72717819173NAC domain-containing protein 19
3swp_D9e-72717819173NAC domain-containing protein 19
4dul_A9e-72717816170NAC domain-containing protein 19
4dul_B9e-72717816170NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.185950.0callus| flower| leaf| panicle| root| seed| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329786230.0
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed at the base of the inflorescence meristem and at late stages of development in petals and stamens. Up-regulated during leaf senescence. {ECO:0000269|PubMed:16640597, ECO:0000269|PubMed:9489703}.
UniprotDEVELOPMENTAL STAGE: Up-regulated during anther and flower development and leaf senescence. {ECO:0000269|PubMed:22278768}.
UniprotTISSUE SPECIFICITY: Expressed in senescing leaves, petals and sepals. {ECO:0000269|PubMed:16640597}.
UniprotTISSUE SPECIFICITY: Highest expression in stamens. Expressed in leaves. {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:22278768}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to, and transactivates the promoter of the abscisic aldehyde oxidase AAO3. Promotes chlorophyll degradation in leaves by enhancing transcription of AAO3, which leads to increased levels of the senescence-inducing hormone abscisic acid (ABA) (PubMed:25516602). Involved in the control of dehydration in senescing leaves. Binds to the DNA sequence 5'-CACGTAAGT-3' of SAG113 promoter. SAG113 acts as negative regulator of ABA signaling for stomatal closure in leaves, and controls water loss during leaf senescence (PubMed:22184656). Transcription factor of the NAC family involved in senescence. May function in the transition between active cell division and cell expansion (PubMed:16640597). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:16640597, ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:22184656, ECO:0000269|PubMed:25516602}.
UniProtTranscription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269|PubMed:22278768}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by the heterodimer APETALA3 (AP3)/PISTILLATA (PI) (PubMed:9489703). Induced by senescence (PubMed:22184656, PubMed:24659488, PubMed:25516602). Induced by abscisic acid (ABA) (PubMed:22184656, PubMed:25516602). Induced by ethylene (PubMed:25516602). {ECO:0000269|PubMed:22184656, ECO:0000269|PubMed:24659488, ECO:0000269|PubMed:25516602, ECO:0000269|PubMed:9489703}.
UniProtINDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8293690.0CT829369.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA056N06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647490.10.0NAC transcription factor 29
SwissprotO492557e-82NAC29_ARATH; NAC transcription factor 29
SwissprotQ8H4S42e-81NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBLA0A0E0QCV30.0A0A0E0QCV3_ORYRU; Uncharacterized protein
TrEMBLB8B6410.0B8B641_ORYSI; Uncharacterized protein
TrEMBLB9FUX70.0B9FUX7_ORYSJ; Uncharacterized protein
TrEMBLI1QDA40.0I1QDA4_ORYGL; Uncharacterized protein
STRINGORUFI07G27590.10.0(Oryza rufipogon)
STRINGORGLA07G0209600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.17e-83NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang K,Gan SS
    An abscisic acid-AtNAP transcription factor-SAG113 protein phosphatase 2C regulatory chain for controlling dehydration in senescing Arabidopsis leaves.
    Plant Physiol., 2012. 158(2): p. 961-9
    [PMID:22184656]
  3. Zhang K,Halitschke R,Yin C,Liu CJ,Gan SS
    Salicylic acid 3-hydroxylase regulates Arabidopsis leaf longevity by mediating salicylic acid catabolism.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(36): p. 14807-12
    [PMID:23959884]
  4. Shinozaki Y, et al.
    Expression of an AtNAP gene homolog in senescing morning glory (Ipomoea nil) petals of two cultivars with a different flower life span.
    J. Plant Physiol., 2014. 171(8): p. 633-8
    [PMID:24709156]
  5. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  6. Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC
    Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription.
    Plant Cell Rep., 2016. 35(1): p. 155-66
    [PMID:26441053]
  7. Seok HY, et al.
    Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response.
    Planta, 2017. 245(2): p. 329-341
    [PMID:27770200]