PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA025647-PA

Common Name

OsI_25897

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 519aa MW: 58588.4 Da PI: 8.3666

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA025647-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63	8.8e-20	138	226	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +Yn+YAk+ GF +++s+ k+s+ ++ ++ f C+ e +++e++ k +++r+ ++ +t+Cka+++v k+ +kw+vt ++l+HnH+ BGIOSGA025647-PA 138 YYNRYAKNWGFGTKVSSCKRSNVTKDYNRYVFACYSERTSKEQNAKssiGSRSRKCNSIRKTDCKARMVVVKR-AEKWVVTIVDLDHNHP 226 8***********************************9999988878888999999**********99.9************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.6E-18	138	226	IPR004330	FAR1 DNA binding domain
Pfam	PF04434	7.2E-7	322	370	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.373	335	371	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.7E-6	346	373	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence Send to blast
MSRLQVWVRD AEVLRAALLE AGIITGPTSI LQVDAGDGFE IEPVNRTGGS EMEAETSVNE 60 QATSVGEKDI DAEVLRAALL KAGIVAGPTS ILQVDAGDGL EIEPATTTEG SEMEGVQSQP 120 VVPFVGMEFF SEKEVRVYYN RYAKNWGFGT KVSSCKRSNV TKDYNRYVFA CYSERTSKEQ 180 NAKSSIGSRS RKCNSIRKTD CKARMVVVKR AEKWVVTIVD LDHNHPPLSP NSLRFLESHR 240 NVSDEDYELI ELLQNNNIPT RRIMDDNQLF ITVQTDPKMW SGYPMEEQDS KFYTREMFEE 300 FQEMLYRATK YKTINGPEPG SYFVQLILDD DNKKFLVHYD INNETYSCAC KKFQRDKILC 360 RHVLKVMTQL NVYMVPEKYM CDRWTLRGTE HATSTLVPAQ NDEGASRKMR YISLCKKSAT 420 VASEACKTKQ GYDLAKKTID DLQATLVMMN SMPQADHTPS LNQTSGSKDS VADVTRLKDP 480 KKKVSRGRPK NSTRLKSVLD DTSGSTGRKK KKPSDSSKF

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence Send to blast

MSRLQVWVRD AEVLRAALLE AGIITGPTSI LQVDAGDGFE IEPVNRTGGS EMEAETSVNE  60
QATSVGEKDI DAEVLRAALL KAGIVAGPTS ILQVDAGDGL EIEPATTTEG SEMEGVQSQP  120
VVPFVGMEFF SEKEVRVYYN RYAKNWGFGT KVSSCKRSNV TKDYNRYVFA CYSERTSKEQ  180
NAKSSIGSRS RKCNSIRKTD CKARMVVVKR AEKWVVTIVD LDHNHPPLSP NSLRFLESHR  240
NVSDEDYELI ELLQNNNIPT RRIMDDNQLF ITVQTDPKMW SGYPMEEQDS KFYTREMFEE  300
FQEMLYRATK YKTINGPEPG SYFVQLILDD DNKKFLVHYD INNETYSCAC KKFQRDKILC  360
RHVLKVMTQL NVYMVPEKYM CDRWTLRGTE HATSTLVPAQ NDEGASRKMR YISLCKKSAT  420
VASEACKTKQ GYDLAKKTID DLQATLVMMN SMPQADHTPS LNQTSGSKDS VADVTRLKDP  480
KKKVSRGRPK NSTRLKSVLD DTSGSTGRKK KKPSDSSKF

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.50918	0.0	stem

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012615	0.0	CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8B5S7	0.0	B8B5S7_ORYSI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2639	10	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	6e-19	FAR1-related sequence 3