PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA025504-PA
Common NameOsI_25611
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 605aa    MW: 64317.5 Da    PI: 3.8166
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA025504-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM81.71.5e-25111441128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk...d 89 
                       lppG+rF+Ptd elv+++L ++++gk+l+l+ vi e+d ++v Pw+L ++ +++ +e +fF++++ k+ +g+r++r +   g W+ +      
  BGIOSGA025504-PA  11 LPPGLRFDPTDGELVSRFLLRRLQGKPLPLNGVILEADPLSVPPWKLLAE-HGRGDEGFFFAEARAKNGKGSRQKRtVEGGGLWQGQRVcadG 102
                       79****************************99***************744.4567799******************4455899*966542222 PP

               NAM  90 kevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++l+      + e v+ k  L f+ ++ ++g ++ Wvmhey++
  BGIOSGA025504-PA 103 EKLLVPegggvEVEIVWRKYLLSFF-AEGERG-SSGWVMHEYAV 144
                       2333335555444559999999999.444554.89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.12E-319163IPR003441NAC domain
PROSITE profilePS5100529.62511163IPR003441NAC domain
PfamPF023658.0E-1512143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MAVGGGGADG LPPGLRFDPT DGELVSRFLL RRLQGKPLPL NGVILEADPL SVPPWKLLAE  60
HGRGDEGFFF AEARAKNGKG SRQKRTVEGG GLWQGQRVCA DGEKLLVPEG GGVEVEIVWR  120
KYLLSFFAEG ERGSSGWVMH EYAVTSPAEL AASPIRLYRV RFSGHGKKRK REPQSGEDGV  180
GRARAAPQSA GTETALLEER VMPPQPAPQS VGTEDALVEE RIPPPQPVPI PPIAGTEDAL  240
DVGTEDVRGR AAPQSAGTES ALLEECVLPP QTAPQITGTG VALLDEVVPP PQTVSISPPA  300
ALVDAVDDAD CANQGCSGVM DDSTMVFSHL PDMITLPAEE GDAAGGAALA SMDYSWADFE  360
FPEINMDELP SCIDFTTTDP SCLDIELSMG DLHEPQSTGI ESDLLEEFVP QPQPVLVPPL  420
AALVEVADSS EGPDQGCSVV MHDSSAVFTH LSDPIVLPEE EEADRPDAPA GTMSLDYQNY  480
SLSDFEFPEY PLLDVAGDAD GADQCSSNVM DDSSMVFSHL KDLITLPAEE AEADACSAAP  540
APSLDNQKYS SQGIIDSEAP ALSDFEFPET IDEVLNSINF TMADPSCLDM EFSMDDLLDF  600
DPPAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-121114215138Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA2YK630.0A2YK63_ORYSI; Uncharacterized protein
STRINGONIVA11G15930.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02250.15e-10NAC domain containing protein 5