PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA025426-PA
Common NameOsI_25450
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family AP2
Protein Properties Length: 436aa    MW: 47432.9 Da    PI: 7.3059
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA025426-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.53e-17121170155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  BGIOSGA025426-PA 121 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 170
                       78*******************......55************************998 PP
2AP242.51.7e-13213263155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a+ +++g
  BGIOSGA025426-PA 213 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDRAAIRFNG 263
                       89********.7******...5...334336**********99**********99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-9121170IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-16121179IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.7E-17122178IPR001471AP2/ERF domain
PROSITE profilePS5103217.82122178IPR001471AP2/ERF domain
SMARTSM003803.1E-31122184IPR001471AP2/ERF domain
CDDcd000187.45E-11122177No hitNo description
PfamPF008474.0E-9213263IPR001471AP2/ERF domain
CDDcd000181.37E-26213273No hitNo description
SuperFamilySSF541716.54E-17213272IPR016177DNA-binding domain
PROSITE profilePS5103216.107214271IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-16214271IPR001471AP2/ERF domain
SMARTSM003804.2E-33214277IPR001471AP2/ERF domain
PRINTSPR003671.8E-6215226IPR001471AP2/ERF domain
PRINTSPR003671.8E-6253273IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MVLDLNVESP GGSAATSSSS TPPPPPDGGG GGYFRFDLLG GSPDEDGCSL PVMTRQLFPS  60
PSAVVALAGD GSSTPPPTMP TPAAAGEGPW PRRAADLGVA QSQRSPAGGK KSRRGPRSRS  120
SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG LDADINFNLN  180
DYEDDLKQMR NWTKEEFVHI LRRQSTGFAR GSSKYRGVTL HKCGRWEARM GQLLGKKYIY  240
LGLFDSEIEA ARAYDRAAIR FNGREAVTNF DPSSYDGDVL PETDNEVVDG DIIDLNLRIS  300
QPNVHELKSD GTLTGFQLNC DSPEASSSVV TQPISPQWPV LPQGTSMSQH PHLYASPCPG  360
FFVNLREVPM EKRPELGPQS FPTSWSWQMQ GSPLPLLPTA ASSGFSTGTV ADAARAPSSR  420
PHPFPGHHQF YFPPTT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.274710.0callus| leaf| panicle| root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth. Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q8H443}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8319750.0CT831975.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA106E13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647891.10.0ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotB8B8J20.0AP23_ORYSI; APETALA2-like protein 3
TrEMBLA0A0E0Q5Y60.0A0A0E0Q5Y6_ORYRU; Uncharacterized protein
TrEMBLI1Q9940.0I1Q994_ORYGL; Uncharacterized protein
STRINGORUFI07G08180.20.0(Oryza rufipogon)
STRINGORGLA07G0068600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-93related to AP2.7