PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA025186-PA | ||||||||
Common Name | OsI_24973 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | YABBY | ||||||||
Protein Properties | Length: 193aa MW: 21784.6 Da PI: 9.6565 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 156.5 | 2.3e-48 | 1 | 125 | 1 | 138 |
YABBY 1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93 ++v+++se+vCyv+Cn+Cntil+v+vP+++++++vtvrCGhCt++ls++la ++q++++++h ++++++++++n+ s+++++++++ BGIOSGA025186-PA 1 MSVQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQDH--------QVQNRGFQGNNFGSYDIASRNQR 85 57999********************************************************9........99********************* PP YABBY 94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiq 138 ts++++ +++++++ +p irPPekrqrvPsaynrfi i+ BGIOSGA025186-PA 86 TSTAMYPMPTSQQQVSP-----IRPPEKRQRVPSAYNRFINSTIR 125 *************9999.....9*****************99887 PP | |||||||
2 | YABBY | 71.1 | 3.9e-22 | 145 | 181 | 134 | 170 |
YABBY 134 keeiqrikasnPdishreafsaaaknWahfPkihfgl 170 eeiqrik+snP+ishreafsaaaknWah+P++hfgl BGIOSGA025186-PA 145 VEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGL 181 59*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.6E-36 | 6 | 125 | IPR006780 | YABBY protein |
Pfam | PF04690 | 3.9E-19 | 145 | 181 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MSVQFTSEHV CYVNCNYCNT ILVVNVPNNC SYNIVTVRCG HCTMVLSMDL APFHQARTVQ 60 DHQVQNRGFQ GNNFGSYDIA SRNQRTSTAM YPMPTSQQQV SPIRPPEKRQ RVPSAYNRFI 120 NSTIRDEYTY IFKGRRKPQL RMGLVEEIQR IKTSNPEISH REAFSAAAKN WAHLPRLHFG 180 LSVADGGGGG GSN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.74707 | 1e-32 | flower| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37990575 | 1e-32 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detected throughout panicle development with the strongest expression in immature panicles, and weakest in mature panicles. Abundantly found in the stamen and carpel primordia of young spikelets. {ECO:0000269|PubMed:15604733, ECO:0000269|PubMed:17216490}. | |||||
Uniprot | TISSUE SPECIFICITY: Preferentially expressed in flowers. Expressed in leaf blades and leaf sheaths. Does not show polar expression pattern. {ECO:0000269|PubMed:15604733}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in floral meristem development and maintenance of stamens, rather than in determining polarity in floral organs. {ECO:0000269|PubMed:15604733, ECO:0000269|PubMed:17369428}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB274013 | 0.0 | AB274013.1 Oryza sativa Japonica Group OsYABBY1 mRNA for OsYABBY1 protein, complete cds. | |||
GenBank | AF098752 | 0.0 | AF098752.1 Oryza sativa clone FIL1 unknown mRNA. | |||
GenBank | AK070045 | 0.0 | AK070045.1 Oryza sativa Japonica Group cDNA clone:J023038F18, full insert sequence. | |||
GenBank | CT828681 | 0.0 | CT828681.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA230C13, full insert sequence. | |||
GenBank | CT828682 | 0.0 | CT828682.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA240F12, full insert sequence. | |||
GenBank | CT828683 | 0.0 | CT828683.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA249C03, full insert sequence. | |||
GenBank | CT828684 | 0.0 | CT828684.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN084I04, full insert sequence. | |||
GenBank | CT832577 | 0.0 | CT832577.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA333Z37, full insert sequence. | |||
GenBank | FJ750932 | 0.0 | FJ750932.1 Oryza sativa clone KCS005G02 MADS-box transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647414.1 | 1e-113 | protein YABBY 1 isoform X1 | ||||
Swissprot | Q7XIM7 | 1e-114 | YAB1_ORYSJ; Protein YABBY 1 | ||||
TrEMBL | B8B7F0 | 1e-144 | B8B7F0_ORYSI; Uncharacterized protein | ||||
STRING | OMERI07G02380.1 | 1e-113 | (Oryza meridionalis) | ||||
STRING | ORUFI07G03450.1 | 1e-113 | (Oryza rufipogon) | ||||
STRING | OS07T0160100-02 | 1e-113 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 1e-49 | YABBY family protein |