PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA024997-PA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 279aa MW: 30358 Da PI: 6.9962 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00014 | 56 | 78 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H BGIOSGA024997-PA 56 YTCSFCRREFRSAQALGGHMNVH 78 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.39E-6 | 53 | 83 | No hit | No description |
Pfam | PF13912 | 1.8E-5 | 56 | 79 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.219 | 56 | 83 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0061 | 56 | 78 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 58 | 78 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MERMAKHYWA LWGAGVRSGW PAAAHGGGAE PSWEEKAFAQ DAAGHLGGCV WPPRSYTCSF 60 CRREFRSAQA LGGHMNVHRR DRARLRQCDD DDDDPIPPTV SICAPPPPPP PLLPAAAAAP 120 DSPSPPSLLL QISSPKSTTA DHHQNHQQLQ LQGTNSSPNS CIATIIKESR NKARLFITTM 180 PAPAPATTHD LGLGGGKDDD DSISISMEEI RRKRRRVDQP LTPTPSYSSE RERRREDDPA 240 AADASNNKVI PSSSILVNQL AMDMVGRQEI DLELRLGST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 2e-13 | 51 | 78 | 2 | 29 | superman protein |
2l1o_A | 2e-13 | 51 | 78 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 211 | 215 | RKRRR |
2 | 212 | 216 | KRRRV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012615 | 0.0 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645557.1 | 1e-153 | zinc finger protein 10 | ||||
TrEMBL | A0A0E0AEX1 | 0.0 | A0A0E0AEX1_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0Q337 | 0.0 | A0A0E0Q337_ORYRU; Uncharacterized protein | ||||
STRING | OGLUM07G00170.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | ORUFI07G00180.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7845 | 29 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17810.1 | 2e-22 | C2H2 family protein |