PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA024948-PA
Common NameOsI_24642
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 288aa    MW: 30215.8 Da    PI: 6.5049
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA024948-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.71.2e-33122179259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+
  BGIOSGA024948-PA 122 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSDDPSVVITTYEGQHSHH 179
                       8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-34106180IPR003657WRKY domain
SuperFamilySSF1182907.19E-29113179IPR003657WRKY domain
PROSITE profilePS5081130.079116181IPR003657WRKY domain
SMARTSM007743.4E-39121180IPR003657WRKY domain
PfamPF031065.8E-27122179IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MAGAGDWPFA ADEAYADSSA IFAELGWANG LAVVDAVGEL LPPLDPPGEL ATPPPPPLDL  60
PETPAGSSAD GAASSCSTDD ADGGKPAAAS TEAASKSLTP GKKRARQPRF AFMTKSEIDH  120
LEDGYRWRKY GQKAVKNSPF PRSYYRCTNS KCTVKKRVER SSDDPSVVIT TYEGQHSHHT  180
VTFPRAAATA AGFSHIHAMA ALAAAPFSAH QQLYSNLQPP PPTMPLAATT PASSSSLLQL  240
PLHCNHELQV VASCGGYPSS SSSPPASVLP VDKGLLDDMV PRAMRHDG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-26111178774Probable WRKY transcription factor 4
2lex_A1e-26111178774Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.389850.0callus| leaf
Os.424900.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO335192030.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00067PBMTransfer from AT1G69310Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2409580.0AK240958.1 Oryza sativa Japonica Group cDNA, clone: J065045F23, full insert sequence.
GenBankAY3418580.0AY341858.1 Oryza sativa (japonica cultivar-group) WRKY18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645717.10.0probable WRKY transcription factor 57
TrEMBLA2YHH20.0A2YHH2_ORYSI; Uncharacterized protein
TrEMBLQ6IEQ20.0Q6IEQ2_ORYSJ; WRKY transcription factor 29
TrEMBLQ8H5U10.0Q8H5U1_ORYSJ; Os07g0111400 protein
STRINGOS07T0111400-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.23e-53WRKY DNA-binding protein 57