PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA023919-PA | ||||||||
Common Name | OsI_26817 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NF-YA | ||||||||
Protein Properties | Length: 297aa MW: 32627.7 Da PI: 8.2716 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 104.2 | 1.2e-32 | 143 | 199 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq Rakle+++kl k+rkpylheSRh+hA++R+RgsgGrF BGIOSGA023919-PA 143 EEPIFVNAKQYHAILRRRQIRAKLEAQNKL-VKGRKPYLHESRHRHAMKRARGSGGRF 199 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.5E-37 | 141 | 202 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 38.238 | 142 | 202 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.3E-27 | 144 | 199 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.7E-24 | 145 | 167 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 147 | 167 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.7E-24 | 176 | 199 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MEDHRSHTTP NYDFFSGDYQ MKQLGHKMYD QDSPSSDSGQ SHQEESAMND SSPNERHTST 60 QSDNNDGHQM PDQDKTKSVS SLGNPGALPP KLDYSQSFAC IPYTADAYYG GVLTGYSSHA 120 IVHPQQNGTA NSRVPLPVEP AAEEPIFVNA KQYHAILRRR QIRAKLEAQN KLVKGRKPYL 180 HESRHRHAMK RARGSGGRFL NTKQLEEQKQ QQEEEAASGG ASSGNRTCLQ NGTGSAPSAS 240 SPSEIASVST SREFLGNHEQ SHFPSAGFLP TMSFRAQNGG DGKLVANAIH QRVSMMR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 7e-23 | 143 | 204 | 2 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 183 | 192 | RHRHAMKRAR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.13736 | 0.0 | callus| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32986893 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant, except roots. {ECO:0000269|PubMed:11867211}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB288033 | 0.0 | AB288033.1 Oryza sativa Japonica Group OsHAP2G mRNA for HAP2 subunit of HAP complex, complete cds. | |||
GenBank | AK101684 | 0.0 | AK101684.1 Oryza sativa Japonica Group cDNA clone:J033058N01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646559.1 | 0.0 | nuclear transcription factor Y subunit A-4 | ||||
Refseq | XP_015646560.1 | 0.0 | nuclear transcription factor Y subunit A-4 | ||||
Refseq | XP_015646561.1 | 0.0 | nuclear transcription factor Y subunit A-4 | ||||
Refseq | XP_015646562.1 | 0.0 | nuclear transcription factor Y subunit A-4 | ||||
Swissprot | Q9LNP6 | 4e-41 | NFYA8_ARATH; Nuclear transcription factor Y subunit A-8 | ||||
TrEMBL | B8B8C3 | 0.0 | B8B8C3_ORYSI; Uncharacterized protein | ||||
STRING | ORGLA07G0166900.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1373 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54160.1 | 1e-33 | nuclear factor Y, subunit A5 |
Publications ? help Back to Top | |||
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