PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA023886-PA

Common Name

OsI_26919

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

CAMTA

Protein Properties

Length: 829aa MW: 91915.9 Da PI: 5.0331

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA023886-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	174.7	1.2e-54	21	137	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 l+ ++rwl+++ei++iL n++k++++ e+++rp sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een++f BGIOSGA023886-PA 21 LEAQNRWLRPTEICHILSNYKKFSIAPEPPNRPASGSLFLFDRKILRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENF 113 5679*************************************************************************************** PP CG-1 95 qrrcywlLeeelekivlvhylevk 118 qrr+y lLee + +ivlvhylevk BGIOSGA023886-PA 114 QRRTYGLLEEGFMNIVLVHYLEVK 137 *******************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	79.701	16	142	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.6E-74	19	137	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	6.8E-49	22	136	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	4.9E-5	405	492	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	1.31E-16	406	492	IPR014756	Immunoglobulin E-set
Pfam	PF01833	1.1E-4	406	479	IPR002909	IPT domain
SuperFamily	SSF48403	1.26E-9	589	655	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.0E-9	594	652	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.52E-7	599	672	No hit	No description
PROSITE profile	PS50297	11.851	605	650	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50096	8.718	759	788	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 829 aa Download sequence Send to blast
MAEVRKYGLP NQPPDIPQIL LEAQNRWLRP TEICHILSNY KKFSIAPEPP NRPASGSLFL 60 FDRKILRYFR KDGHNWRKKK DGKTVKEAHE KLKVGSVDVL HCYYAHGEEN ENFQRRTYGL 120 LEEGFMNIVL VHYLEVKGGK QSFSRSKEAE ESAGLSNADS PACSNSFASQ SQVASQSMDA 180 ESPISGQISE YEDAETGAGY HGEMQTTTAN SDNHFATHYD IAGVFNEAGA GLRGVSKTLH 240 DSVRFAEPYP ECSAEFMEPA LYSSNATMES NNLDDNSRLE TFMSEALYTN NLTQKEADAL 300 SAAGIMSSQA ENNSYTDGIR YPLLKQSSLD LFKIEPDGLK KFDSFSRWMS SELPEVADLD 360 IKSSSDAFWS STETVNVADG TSIPINEQLD AFAVSPSLSQ DQLFSIIDVS PSYACTGSRN 420 KVLITGTFLA NKEHVENCKW SCMFGDVEVP AEVLAHGSLR CYTPVHLSGR VPFYVTCSNR 480 VACSEVREFE FRDSDARQMD TSDPQTTGIN EMHLHIRLEK LLSLGPDDYE KYVMSDGKEK 540 SEIINTISSL MLDDKCLNQA VPLDEKEVST ARDQNIEKLV KEKLYCWLVH KVHDEDKGPN 600 VLGKEGQGVI HLVAALGYDW AVRPIITAGV KVNFRDARGW TALHWAASCG SHLSALTLKE 660 SKDGNVKEIC GLGGAEDFAE SSSAQLAYRD SQAESLKDSL SAVRKSTQAA ARIFQAFRVE 720 SFHRKKVVEY GDDDCGLSDE RTLSLVSIKN AKPGQNDGSH SAAVRIQNKF RGWKGRKEFM 780 IIRQKIVKIQ AMMIQDDMQS DGAIADGGDF MAELEELCGD GDAPMPTIL

Sequence ? help Back to Top

Protein Sequence Length: 829 aa Download sequence Send to blast

MAEVRKYGLP NQPPDIPQIL LEAQNRWLRP TEICHILSNY KKFSIAPEPP NRPASGSLFL  60
FDRKILRYFR KDGHNWRKKK DGKTVKEAHE KLKVGSVDVL HCYYAHGEEN ENFQRRTYGL  120
LEEGFMNIVL VHYLEVKGGK QSFSRSKEAE ESAGLSNADS PACSNSFASQ SQVASQSMDA  180
ESPISGQISE YEDAETGAGY HGEMQTTTAN SDNHFATHYD IAGVFNEAGA GLRGVSKTLH  240
DSVRFAEPYP ECSAEFMEPA LYSSNATMES NNLDDNSRLE TFMSEALYTN NLTQKEADAL  300
SAAGIMSSQA ENNSYTDGIR YPLLKQSSLD LFKIEPDGLK KFDSFSRWMS SELPEVADLD  360
IKSSSDAFWS STETVNVADG TSIPINEQLD AFAVSPSLSQ DQLFSIIDVS PSYACTGSRN  420
KVLITGTFLA NKEHVENCKW SCMFGDVEVP AEVLAHGSLR CYTPVHLSGR VPFYVTCSNR  480
VACSEVREFE FRDSDARQMD TSDPQTTGIN EMHLHIRLEK LLSLGPDDYE KYVMSDGKEK  540
SEIINTISSL MLDDKCLNQA VPLDEKEVST ARDQNIEKLV KEKLYCWLVH KVHDEDKGPN  600
VLGKEGQGVI HLVAALGYDW AVRPIITAGV KVNFRDARGW TALHWAASCG SHLSALTLKE  660
SKDGNVKEIC GLGGAEDFAE SSSAQLAYRD SQAESLKDSL SAVRKSTQAA ARIFQAFRVE  720
SFHRKKVVEY GDDDCGLSDE RTLSLVSIKN AKPGQNDGSH SAAVRIQNKF RGWKGRKEFM  780
IIRQKIVKIQ AMMIQDDMQS DGAIADGGDF MAELEELCGD GDAPMPTIL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.97411	0.0	leaf

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004341	0.0	AP004341.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0524E08.
GenBank	AP014963	0.0	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBank	CP012615	0.0	CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015647012.1	0.0	calmodulin-binding transcription activator 1 isoform X1
TrEMBL	B8B4X7	0.0	B8B4X7_ORYSI; Uncharacterized protein
STRING	OMERI07G19500.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP608	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09410.1	0.0	ethylene induced calmodulin binding protein