PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA022752-PA
Common NameOsI_22667
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 424aa    MW: 49438.7 Da    PI: 9.5645
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA022752-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.2e-07224264346
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +WT+eE e++ + v++ G+  W + a+++g  +++ ++k+ w+ 
  BGIOSGA022752-PA 224 KWTPEEYEKIRRHVEKNGTS-WISLAQELG--KSEIHLKDTWRR 264
                       8*****************99.********8..9*******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.2148219IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-4149212IPR009057Homeodomain-like
PROSITE profilePS500903.95151217IPR017877Myb-like domain
SMARTSM007170.51221268IPR001005SANT/Myb domain
SuperFamilySSF466894.86E-8223287IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-8224276IPR009057Homeodomain-like
PROSITE profilePS500906.806224266IPR017877Myb-like domain
PfamPF139217.1E-9225283No hitNo description
PROSITE profilePS500907.155267335IPR017877Myb-like domain
SMARTSM007175.1271337IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-7277320IPR009057Homeodomain-like
SuperFamilySSF466891.31E-6315392IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-4321387IPR009057Homeodomain-like
PROSITE profilePS500907.898337390IPR017877Myb-like domain
SMARTSM0071719341392IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MTNRDKKRRR KEHSVELKEG DQVNISRKAV KIKGNKKRKN ESDKFNPDLS TDALTGEDKV  60
GGDGKNDKRK KKNDTSTRRN EVGRDDKNDK KKKKSKERNG GRKGEKEKAA QSKDKVRRVS  120
FSDAVEVFSI NDGEDEDNGK SAESEVVHGK RFTPEENATL MEAIMSYIEM KQLGENGLEM  180
IRACSKHPEL KGCWAEIGKS LPHRPLTAIY KRARILLYRS DERKWTPEEY EKIRRHVEKN  240
GTSWISLAQE LGKSEIHLKD TWRRIKPKNL KSGQWTQDEY QNLFDLVNLD LRVKAHQEYD  300
AGNRKLRDNI AWEAISDKLT TRNHKNCCLK WYYQLASPLV QKGIWADTDD YRLVEALQNV  360
DAVCVEDIDW DNLLDHRSGE VCRQRWNEMV RYLGGHKEKP FIEQVEVLSK RYCPEMVDYR  420
EGEA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1510KKRRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.180710.0callus| seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643783.10.0RNA polymerase I termination factor isoform X1
TrEMBLB8B0X70.0B8B0X7_ORYSI; Uncharacterized protein
STRINGORUFI06G12620.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-101MYB_related family protein