PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA022512-PA
Common NameOsI_22090
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 310aa    MW: 30950.7 Da    PI: 7.3827
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA022512-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-05113135123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++C + F+++  L  H++ H
  BGIOSGA022512-PA 113 FECHYCRRNFPTSQALGGHQNAH 135
                       89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.91E-6110141No hitNo description
PfamPF139125.9E-6112137IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.323113140IPR007087Zinc finger, C2H2
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MAAAGLAAAA TPGSGAGGPK GGAGRISVGV ELGAREKLTA QLSLATDVVM AAPHGMHGVA  60
AAAPDATIRL FGRDVVSNDD AVVVVVDGQL PKEEAEEEAG GGAAAAAGET RRFECHYCRR  120
NFPTSQALGG HQNAHKRERQ HARRAHLEAS LAAAHYLGQS AHLVYGGAAL FGYGGHAAAV  180
SPQYGPVWAS SAVAPPGLYA TSMGMARPAA YGAGVDVSAL WRASSSSSSS PPMMGSGGGG  240
AFGTVAGGGR HGEAAAAALV GCRAGKDENV VMSVVTSLPS LPSWQLPAPE KMGRSELGQE  300
AGVVSLELRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.507915e-42leaf| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329787875e-42
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047540.0AP004754.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0529B09.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882184.10.0zinc finger protein 8-like
TrEMBLB8B3X20.0B8B3X2_ORYSI; Uncharacterized protein
STRINGORUFI06G06970.10.0(Oryza rufipogon)
STRINGONIVA06G08040.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP8341720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41940.11e-18zinc finger protein 8