PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA022508-PA | ||||||||
Common Name | OsI_22084 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 247aa MW: 26080.9 Da PI: 5.7792 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.8 | 3.7e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT Ed+ l+ ++k +G g W+ ++++ g++R++k+c++rw++yl BGIOSGA022508-PA 14 RGAWTSKEDDVLASYIKSHGEGKWREVPQRAGLRRCGKSCRLRWLNYL 61 89********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 6 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.594 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.93E-20 | 15 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.07E-8 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-5 | 64 | 87 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006633 | Biological Process | fatty acid biosynthetic process | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0010023 | Biological Process | proanthocyanidin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MGRRACCAKE GMKRGAWTSK EDDVLASYIK SHGEGKWREV PQRAGLRRCG KSCRLRWLNY 60 LRPNIKRGNI DDDEEELIVR LHTLLGNSRK IGTAATAAAG SRGGSTPDTA RATDAASSSS 120 VVPPGQQQQP ASRADTDTAT AAAAAAATTT TVWAPKAVRC TRGFFFHDRE TAPLAAAAPA 180 PAGELGDGDD VDCDYYCSGS SSAATTTSSS SLPAVVEPCF SAGDDWMDDV RALASFLDTD 240 DAWNLCA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.81367 | 0.0 | stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 4138298 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB111869 | 0.0 | AB111869.1 Oryza sativa C gene for Myb protein, complete cds, haplotype:SA3. | |||
GenBank | AB111871 | 0.0 | AB111871.1 Oryza sativa Japonica Group C gene for Myb protein, complete cds, haplotype:SA5. | |||
GenBank | AB111872 | 0.0 | AB111872.1 Oryza sativa Indica Group C gene for Myb protein, complete cds, haplotype:SA6. | |||
GenBank | AB111874 | 0.0 | AB111874.1 Oryza sativa Indica Group C gene for Myb protein, complete cds, haplotype:SA8. | |||
GenBank | AB111875 | 0.0 | AB111875.1 Oryza sativa Indica Group C gene for Myb protein, complete cds, haplotype:SA9. | |||
GenBank | AP005652 | 0.0 | AP005652.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBb0015B15. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. | |||
GenBank | HQ379703 | 0.0 | HQ379703.1 Oryza sativa Japonica Group isolate Z418-A C1 protein (C1) mRNA, complete cds. | |||
GenBank | HQ379705 | 0.0 | HQ379705.1 Oryza sativa Japonica Group isolate Z418 C1 protein (C1) gene, complete cds. | |||
GenBank | KJ934838 | 0.0 | KJ934838.1 Oryza sativa cultivar Local Basmati Myb protein (C) gene, complete cds. | |||
GenBank | KJ934839 | 0.0 | KJ934839.1 Oryza sativa cultivar Arfa Myb protein (C) gene, complete cds. | |||
GenBank | KJ934840 | 0.0 | KJ934840.1 Oryza sativa cultivar Mulahail Myb protein (C) gene, complete cds. | |||
GenBank | KJ934841 | 0.0 | KJ934841.1 Oryza sativa cultivar Guaroi Myb protein (C) gene, complete cds. | |||
GenBank | KJ934842 | 0.0 | KJ934842.1 Oryza sativa cultivar Harinarayan Myb protein (C) gene, complete cds. | |||
GenBank | KJ934843 | 0.0 | KJ934843.1 Oryza sativa cultivar Ranjit Myb protein (C) gene, complete cds. | |||
GenBank | KJ934844 | 0.0 | KJ934844.1 Oryza sativa cultivar IR8 Myb protein (C) gene, complete cds. | |||
GenBank | KJ934845 | 0.0 | KJ934845.1 Oryza sativa cultivar Bahadur Myb protein (C) gene, complete cds. | |||
GenBank | KJ934847 | 0.0 | KJ934847.1 Oryza sativa cultivar Joya Myb protein (C) gene, complete cds. | |||
GenBank | Y15219 | 0.0 | Y15219.1 Oryza sativa mRNA for transcriptional activator. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642631.1 | 1e-132 | anthocyanin regulatory C1 protein | ||||
Swissprot | P10290 | 4e-64 | MYBC_MAIZE; Anthocyanin regulatory C1 protein | ||||
TrEMBL | A2YAG9 | 1e-178 | A2YAG9_ORYSI; Uncharacterized protein | ||||
STRING | ORGLA06G0059500.1 | 1e-131 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16720.1 | 2e-39 | myb domain protein 7 |