PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA022172-PA | ||||||||
Common Name | OsI_21351 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | B3 | ||||||||
Protein Properties | Length: 176aa MW: 18973.8 Da PI: 5.2481 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.4 | 9.5e-17 | 61 | 153 | 5 | 98 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelvv 94 +s+ + + ++++p +f h + ++e +t + ++ g+sW + +++ ++ l +GW+eF+ +n+L +gD +vF+l+ g + e+ v BGIOSGA022172-PA 61 IAKSHLHPKFQMWIPPRFQ--HRLAEPEARTAAVLHSGGKSWATSY--CGHLKMKKLDAGWSEFAVDNRLLVGDACVFELVamGAaGGLEFQV 149 34566667799*******6..6666778889***************..*******************************76446667777777 PP EEE- CS B3 95 kvfr 98 +++r BGIOSGA022172-PA 150 QILR 153 7766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.7E-19 | 52 | 153 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-18 | 53 | 153 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.08E-15 | 55 | 153 | No hit | No description |
SMART | SM01019 | 0.0022 | 57 | 155 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.957 | 57 | 155 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.0E-15 | 60 | 153 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MELDTDPTKL KAKPIIKPKV EPCDDDDELP PPPPPPASGS GEDWEATTPL AAGNPFFTAL 60 IAKSHLHPKF QMWIPPRFQH RLAEPEARTA AVLHSGGKSW ATSYCGHLKM KKLDAGWSEF 120 AVDNRLLVGD ACVFELVAMG AAGGLEFQVQ ILRGGLPAEV VTSKGLTSDQ PILIVD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.20309 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32992129 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106920 | 0.0 | AK106920.1 Oryza sativa Japonica Group cDNA clone:002-119-B04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643738.1 | 1e-110 | B3 domain-containing protein Os06g0112300 | ||||
Refseq | XP_015643739.1 | 1e-110 | B3 domain-containing protein Os06g0112300 | ||||
Refseq | XP_025882046.1 | 1e-110 | B3 domain-containing protein Os06g0112300 | ||||
Swissprot | Q9LHY9 | 1e-111 | Y6112_ORYSJ; B3 domain-containing protein Os06g0112300 | ||||
TrEMBL | A0A0E0HJU6 | 1e-125 | A0A0E0HJU6_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2Y8H3 | 1e-125 | A2Y8H3_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI06G00790.1 | 1e-108 | (Oryza rufipogon) | ||||
STRING | OS06T0112300-01 | 1e-110 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12046 | 19 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 2e-07 | B3 family protein |
Publications ? help Back to Top | |||
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