PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA022158-PA
Common NameOsI_21328
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TALE
Protein Properties Length: 524aa    MW: 57507.3 Da    PI: 7.7848
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA022158-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.51.1e-083133501954
                       HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       Fe   ++yp+  ++  LA+++gL+ +qV++WF N R +
  BGIOSGA022158-PA 313 FEHflHPYPNDVDKHILARQTGLSRSQVSNWFINARVR 350
                       554459******************************88 PP
2BELL98.84.2e-32169237472
              BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       +l+++ka++ls++eeVd+rY++y+eq+++v  sFeavag g+a++Yt+lA++a+SrhFrcL+da+++q+
  BGIOSGA022158-PA 169 DLERRKARILSMVEEVDRRYRRYREQMRAVEVSFEAVAGGGAAQVYTKLAMRAMSRHFRCLRDALVGQV 237
                       6899**************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.5E-71100235IPR006563POX domain
PfamPF075261.2E-39106233IPR006563POX domain
PROSITE profilePS5007111.564291354IPR001356Homeobox domain
CDDcd000861.15E-11294355No hitNo description
SMARTSM003896.5E-9294358IPR001356Homeobox domain
SuperFamilySSF466895.99E-17295361IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-27297360IPR009057Homeodomain-like
PfamPF059202.5E-17311350IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MAAHHHHHEH HHLLDMSSPP NASGAIISSF DHAAGLLSLH DVAAAADHHH HHLRGGGGGL  60
QLPSPWSQQQ VSLSLYNNAA GAAGSPPSSL VAHQQLAAAQ PLMFQLRGSK YLGPVKALLA  120
EFCSLDVEAM DGAKQQRPPN PNPKIGKWDD VEGSGSWGNL SLSSMDLLDL ERRKARILSM  180
VEEVDRRYRR YREQMRAVEV SFEAVAGGGA AQVYTKLAMR AMSRHFRCLR DALVGQVRAL  240
RNAMGESQRD AAGGVAAAAP GATKGDTPRL RVLDQCLRQQ RAFQQSGAVD SFPWRPQRGL  300
PERAVAVLRA WLFEHFLHPY PNDVDKHILA RQTGLSRSQV SNWFINARVR LWKPMIEDMY  360
KEETKPESSD GNNKLNPSAA GNKQQHRDDP KKNYTATTAE ASLVQQSSYH LHLRSSGNPN  420
SSSLMIPAAA STSIDHHHDS SHQLLGGHSY SSAAGLHHGH GGAVSLTLGL QQQQQPFAAS  480
MMHQHQQQQQ QSFMVEAAEE EEDDVLPYRN LMESQLLHDF AGAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-15300357562Homeobox protein Meis2
3k2a_B4e-15300357562Homeobox protein Meis2
4xrs_A3e-15300357158Homeobox protein Meis1
4xrs_B3e-15300357158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.93320.0flower| leaf| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379881530.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2188950.0AB218895.1 Oryza sativa Japonica Group mRNA for OsBEL protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641004.10.0homeobox protein BEL1 homolog
TrEMBLB8B1J20.0B8B1J2_ORYSI; Uncharacterized protein
STRINGORGLA06G0005600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63983547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.12e-87TALE family protein